Hb_004108_080

Information

Type -
Description -
Location Contig4108: 35836-39755
Sequence    

Annotation

kegg
ID vvi:100240756
description endo-1,3;1,4-beta-D-glucanase-like
nr
ID XP_002275501.1
description PREDICTED: endo-1,3;1,4-beta-D-glucanase [Vitis vinifera]
swissprot
ID Q9ZT66
description Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1
trembl
ID A5B9P5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036609 PE=4 SV=1
Gene Ontology
ID GO:0016787
description endo- -beta-d-glucanase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40567: 35908-39690 , PASA_asmbl_40568: 38214-38587
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_080 0.0 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase [Vitis vinifera]
2 Hb_005056_060 0.0616629128 - - PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
3 Hb_000567_030 0.0854157938 - - hypothetical protein JCGZ_21550 [Jatropha curcas]
4 Hb_008554_020 0.1120069716 - - -
5 Hb_004310_030 0.1148805101 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
6 Hb_000446_030 0.1158802757 - - amino acid binding protein, putative [Ricinus communis]
7 Hb_005329_020 0.118724656 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
8 Hb_000840_190 0.1205833128 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
9 Hb_007254_040 0.121318546 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
10 Hb_009158_030 0.1216014242 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
11 Hb_029879_110 0.122255154 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
12 Hb_000696_340 0.1229578229 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
13 Hb_000054_100 0.1231431648 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
14 Hb_004657_020 0.1253251678 - - rer1 protein, putative [Ricinus communis]
15 Hb_032717_080 0.125356071 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
16 Hb_000329_630 0.125472669 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
17 Hb_000221_210 0.1258360374 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
18 Hb_046157_020 0.1291859233 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
19 Hb_011310_190 0.1293696168 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
20 Hb_000395_080 0.1301613229 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004108_080 Hb_004108_080 Hb_005056_060 Hb_005056_060 Hb_004108_080--Hb_005056_060 Hb_000567_030 Hb_000567_030 Hb_004108_080--Hb_000567_030 Hb_008554_020 Hb_008554_020 Hb_004108_080--Hb_008554_020 Hb_004310_030 Hb_004310_030 Hb_004108_080--Hb_004310_030 Hb_000446_030 Hb_000446_030 Hb_004108_080--Hb_000446_030 Hb_005329_020 Hb_005329_020 Hb_004108_080--Hb_005329_020 Hb_005056_060--Hb_000567_030 Hb_000395_080 Hb_000395_080 Hb_005056_060--Hb_000395_080 Hb_005056_060--Hb_004310_030 Hb_005056_060--Hb_005329_020 Hb_007254_040 Hb_007254_040 Hb_005056_060--Hb_007254_040 Hb_005389_150 Hb_005389_150 Hb_000567_030--Hb_005389_150 Hb_000086_380 Hb_000086_380 Hb_000567_030--Hb_000086_380 Hb_000003_080 Hb_000003_080 Hb_000567_030--Hb_000003_080 Hb_003266_050 Hb_003266_050 Hb_000567_030--Hb_003266_050 Hb_008554_020--Hb_007254_040 Hb_007317_180 Hb_007317_180 Hb_008554_020--Hb_007317_180 Hb_008554_020--Hb_004310_030 Hb_011310_190 Hb_011310_190 Hb_008554_020--Hb_011310_190 Hb_003052_100 Hb_003052_100 Hb_008554_020--Hb_003052_100 Hb_117134_010 Hb_117134_010 Hb_008554_020--Hb_117134_010 Hb_004310_030--Hb_007254_040 Hb_007894_140 Hb_007894_140 Hb_004310_030--Hb_007894_140 Hb_000638_080 Hb_000638_080 Hb_004310_030--Hb_000638_080 Hb_001135_050 Hb_001135_050 Hb_004310_030--Hb_001135_050 Hb_005539_030 Hb_005539_030 Hb_004310_030--Hb_005539_030 Hb_000025_120 Hb_000025_120 Hb_000446_030--Hb_000025_120 Hb_000987_120 Hb_000987_120 Hb_000446_030--Hb_000987_120 Hb_001722_100 Hb_001722_100 Hb_000446_030--Hb_001722_100 Hb_000696_340 Hb_000696_340 Hb_000446_030--Hb_000696_340 Hb_174865_030 Hb_174865_030 Hb_000446_030--Hb_174865_030 Hb_000221_150 Hb_000221_150 Hb_000446_030--Hb_000221_150 Hb_005329_020--Hb_000696_340 Hb_000329_630 Hb_000329_630 Hb_005329_020--Hb_000329_630 Hb_000571_120 Hb_000571_120 Hb_005329_020--Hb_000571_120 Hb_005329_020--Hb_000395_080 Hb_000877_060 Hb_000877_060 Hb_005329_020--Hb_000877_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.5529 42.291 26.1407 36.3025 31.3656 87.1427
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
175.52 90.4368 44.9246 47.0549 25.9809

CAGE analysis