Hb_000446_030

Information

Type -
Description -
Location Contig446: 71114-75546
Sequence    

Annotation

kegg
ID rcu:RCOM_0253240
description amino acid binding protein, putative
nr
ID XP_002533376.1
description amino acid binding protein, putative [Ricinus communis]
swissprot
ID Q9SJM1
description ACT domain-containing protein ACR10 OS=Arabidopsis thaliana GN=ACR10 PE=2 SV=1
trembl
ID B9T557
description Amino acid binding protein, putative OS=Ricinus communis GN=RCOM_0253240 PE=4 SV=1
Gene Ontology
ID GO:0016597
description amino acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43006: 70991-71683 , PASA_asmbl_43007: 71180-73514 , PASA_asmbl_43008: 75081-75496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000446_030 0.0 - - amino acid binding protein, putative [Ricinus communis]
2 Hb_000025_120 0.102549732 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
3 Hb_000987_120 0.103333934 - - PREDICTED: protein SIEL [Jatropha curcas]
4 Hb_001722_100 0.1074972964 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000696_340 0.1076517009 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
6 Hb_174865_030 0.1092259613 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
7 Hb_000221_150 0.1096401663 - - -
8 Hb_000123_170 0.1106623542 - - Rab3 [Hevea brasiliensis]
9 Hb_014720_080 0.1108225729 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
10 Hb_020400_050 0.1110851606 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
11 Hb_000221_210 0.1152715631 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
12 Hb_004108_080 0.1158802757 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase [Vitis vinifera]
13 Hb_005736_060 0.1165942911 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
14 Hb_021056_020 0.1167837642 - - plasma membrane H+-ATPase [Hevea brasiliensis]
15 Hb_001439_100 0.1184577663 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
16 Hb_002061_040 0.1194410941 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
17 Hb_003893_090 0.1199516564 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
18 Hb_000125_190 0.1217039623 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
19 Hb_000506_120 0.1224174993 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
20 Hb_000230_270 0.1226969579 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000446_030 Hb_000446_030 Hb_000025_120 Hb_000025_120 Hb_000446_030--Hb_000025_120 Hb_000987_120 Hb_000987_120 Hb_000446_030--Hb_000987_120 Hb_001722_100 Hb_001722_100 Hb_000446_030--Hb_001722_100 Hb_000696_340 Hb_000696_340 Hb_000446_030--Hb_000696_340 Hb_174865_030 Hb_174865_030 Hb_000446_030--Hb_174865_030 Hb_000221_150 Hb_000221_150 Hb_000446_030--Hb_000221_150 Hb_000496_060 Hb_000496_060 Hb_000025_120--Hb_000496_060 Hb_014720_080 Hb_014720_080 Hb_000025_120--Hb_014720_080 Hb_000347_410 Hb_000347_410 Hb_000025_120--Hb_000347_410 Hb_001105_070 Hb_001105_070 Hb_000025_120--Hb_001105_070 Hb_000146_020 Hb_000146_020 Hb_000025_120--Hb_000146_020 Hb_000834_270 Hb_000834_270 Hb_000025_120--Hb_000834_270 Hb_000987_120--Hb_174865_030 Hb_000307_090 Hb_000307_090 Hb_000987_120--Hb_000307_090 Hb_000987_120--Hb_001722_100 Hb_000522_080 Hb_000522_080 Hb_000987_120--Hb_000522_080 Hb_005736_060 Hb_005736_060 Hb_000987_120--Hb_005736_060 Hb_003185_080 Hb_003185_080 Hb_000987_120--Hb_003185_080 Hb_001722_100--Hb_014720_080 Hb_001235_190 Hb_001235_190 Hb_001722_100--Hb_001235_190 Hb_002963_010 Hb_002963_010 Hb_001722_100--Hb_002963_010 Hb_007479_020 Hb_007479_020 Hb_001722_100--Hb_007479_020 Hb_001722_100--Hb_000834_270 Hb_008173_090 Hb_008173_090 Hb_001722_100--Hb_008173_090 Hb_000221_210 Hb_000221_210 Hb_000696_340--Hb_000221_210 Hb_002137_020 Hb_002137_020 Hb_000696_340--Hb_002137_020 Hb_005329_020 Hb_005329_020 Hb_000696_340--Hb_005329_020 Hb_000329_630 Hb_000329_630 Hb_000696_340--Hb_000329_630 Hb_004223_280 Hb_004223_280 Hb_000696_340--Hb_004223_280 Hb_012022_030 Hb_012022_030 Hb_000696_340--Hb_012022_030 Hb_174865_030--Hb_001722_100 Hb_002540_030 Hb_002540_030 Hb_174865_030--Hb_002540_030 Hb_174865_030--Hb_001235_190 Hb_174865_030--Hb_000522_080 Hb_001080_080 Hb_001080_080 Hb_000221_150--Hb_001080_080 Hb_000340_140 Hb_000340_140 Hb_000221_150--Hb_000340_140 Hb_000028_400 Hb_000028_400 Hb_000221_150--Hb_000028_400 Hb_000364_030 Hb_000364_030 Hb_000221_150--Hb_000364_030 Hb_007416_020 Hb_007416_020 Hb_000221_150--Hb_007416_020 Hb_000333_090 Hb_000333_090 Hb_000221_150--Hb_000333_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.93902 7.65166 3.12573 5.1042 4.2671 9.24761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.6767 16.2 10.7411 7.5908 3.19368

CAGE analysis