Hb_007441_230

Information

Type -
Description -
Location Contig7441: 153407-161151
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05210g
description hypothetical protein
nr
ID XP_012083744.1
description PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
swissprot
ID O80505
description Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase OS=Arabidopsis thaliana GN=At2g44660 PE=2 SV=3
trembl
ID A0A067K9D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14666 PE=4 SV=1
Gene Ontology
ID GO:0005789
description probable dolichyl pyrophosphate glc1man9 c2 alpha- -glucosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56631: 153500-155663 , PASA_asmbl_56632: 156296-157019 , PASA_asmbl_56633: 156313-156641 , PASA_asmbl_56634: 157338-160920 , PASA_asmbl_56635: 158293-159997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_230 0.0 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
2 Hb_002137_020 0.0621690797 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000805_020 0.0751556548 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
4 Hb_004223_280 0.0802985278 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
5 Hb_005305_080 0.0834898164 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
6 Hb_007441_200 0.0839045212 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
7 Hb_000571_120 0.0855728924 - - importin beta-1, putative [Ricinus communis]
8 Hb_005618_170 0.0889248712 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
9 Hb_001635_060 0.0890209017 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
10 Hb_002016_110 0.0897669944 - - transducin family protein [Populus trichocarpa]
11 Hb_004218_110 0.0899766104 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
12 Hb_000041_050 0.0902706208 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
13 Hb_001789_090 0.0917175753 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
14 Hb_002061_040 0.0918158589 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
15 Hb_002631_060 0.0955863409 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
16 Hb_001898_220 0.0962812235 - - PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1 [Jatropha curcas]
17 Hb_012022_030 0.0969769986 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
18 Hb_000260_270 0.0972544253 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000696_340 0.0975502977 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
20 Hb_000291_110 0.0976630481 - - eukaryotic translation initiation factor [Hevea brasiliensis]

Gene co-expression network

sample Hb_007441_230 Hb_007441_230 Hb_002137_020 Hb_002137_020 Hb_007441_230--Hb_002137_020 Hb_000805_020 Hb_000805_020 Hb_007441_230--Hb_000805_020 Hb_004223_280 Hb_004223_280 Hb_007441_230--Hb_004223_280 Hb_005305_080 Hb_005305_080 Hb_007441_230--Hb_005305_080 Hb_007441_200 Hb_007441_200 Hb_007441_230--Hb_007441_200 Hb_000571_120 Hb_000571_120 Hb_007441_230--Hb_000571_120 Hb_002137_020--Hb_004223_280 Hb_002137_020--Hb_000571_120 Hb_012022_030 Hb_012022_030 Hb_002137_020--Hb_012022_030 Hb_003464_060 Hb_003464_060 Hb_002137_020--Hb_003464_060 Hb_002016_110 Hb_002016_110 Hb_002137_020--Hb_002016_110 Hb_004907_110 Hb_004907_110 Hb_000805_020--Hb_004907_110 Hb_002026_180 Hb_002026_180 Hb_000805_020--Hb_002026_180 Hb_007416_320 Hb_007416_320 Hb_000805_020--Hb_007416_320 Hb_000805_020--Hb_007441_200 Hb_010883_090 Hb_010883_090 Hb_000805_020--Hb_010883_090 Hb_005357_030 Hb_005357_030 Hb_004223_280--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_004223_280--Hb_002685_170 Hb_000613_140 Hb_000613_140 Hb_004223_280--Hb_000613_140 Hb_001477_130 Hb_001477_130 Hb_004223_280--Hb_001477_130 Hb_000510_130 Hb_000510_130 Hb_004223_280--Hb_000510_130 Hb_010504_020 Hb_010504_020 Hb_005305_080--Hb_010504_020 Hb_005618_170 Hb_005618_170 Hb_005305_080--Hb_005618_170 Hb_005305_080--Hb_000510_130 Hb_004254_120 Hb_004254_120 Hb_005305_080--Hb_004254_120 Hb_032202_190 Hb_032202_190 Hb_005305_080--Hb_032202_190 Hb_000876_070 Hb_000876_070 Hb_005305_080--Hb_000876_070 Hb_003106_060 Hb_003106_060 Hb_007441_200--Hb_003106_060 Hb_007441_200--Hb_005618_170 Hb_007441_200--Hb_005305_080 Hb_007441_200--Hb_000571_120 Hb_018838_030 Hb_018838_030 Hb_007441_200--Hb_018838_030 Hb_000571_120--Hb_002026_180 Hb_000953_020 Hb_000953_020 Hb_000571_120--Hb_000953_020 Hb_000768_040 Hb_000768_040 Hb_000571_120--Hb_000768_040 Hb_000571_120--Hb_000805_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.00053 7.22982 1.74863 5.31308 8.15606 11.9157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8238 12.5644 13.3022 10.0762 4.30592

CAGE analysis