Hb_000086_060

Information

Type -
Description -
Location Contig86: 40376-43780
Sequence    

Annotation

kegg
ID rcu:RCOM_0499250
description protein transporter, putative
nr
ID XP_011004050.1
description PREDICTED: TOM1-like protein 2 isoform X2 [Populus euphratica]
swissprot
ID Q54GH3
description Target of Myb protein 1 OS=Dictyostelium discoideum GN=tom1 PE=1 SV=1
trembl
ID B9T1B0
description Protein transporter, putative OS=Ricinus communis GN=RCOM_0499250 PE=4 SV=1
Gene Ontology
ID GO:0005622
description tom1-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60691: 40474-43709 , PASA_asmbl_60692: 40989-41759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_060 0.0 - - PREDICTED: TOM1-like protein 2 isoform X2 [Populus euphratica]
2 Hb_000221_210 0.0874640438 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
3 Hb_005941_040 0.1164662411 - - PREDICTED: CASP-like protein 5A2 [Jatropha curcas]
4 Hb_000261_440 0.1169809044 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
5 Hb_000987_120 0.1190712968 - - PREDICTED: protein SIEL [Jatropha curcas]
6 Hb_005653_060 0.121057237 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
7 Hb_000212_350 0.121651385 - - glucosamine-fructose-6-phosphate aminotransferase, putative [Ricinus communis]
8 Hb_003185_080 0.1228225086 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
9 Hb_174865_030 0.1242906027 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
10 Hb_000696_340 0.1247129849 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
11 Hb_000446_030 0.1297672133 - - amino acid binding protein, putative [Ricinus communis]
12 Hb_004108_080 0.131550366 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase [Vitis vinifera]
13 Hb_001722_100 0.1339507776 - - conserved hypothetical protein [Ricinus communis]
14 Hb_023226_040 0.1341609543 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
15 Hb_154623_010 0.1359856734 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
16 Hb_001195_690 0.1360083623 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
17 Hb_022092_120 0.1375726305 - - PREDICTED: uncharacterized protein LOC105646971 [Jatropha curcas]
18 Hb_002030_040 0.1379798004 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
19 Hb_000638_080 0.1392208162 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
20 Hb_000635_180 0.139419875 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_060 Hb_000086_060 Hb_000221_210 Hb_000221_210 Hb_000086_060--Hb_000221_210 Hb_005941_040 Hb_005941_040 Hb_000086_060--Hb_005941_040 Hb_000261_440 Hb_000261_440 Hb_000086_060--Hb_000261_440 Hb_000987_120 Hb_000987_120 Hb_000086_060--Hb_000987_120 Hb_005653_060 Hb_005653_060 Hb_000086_060--Hb_005653_060 Hb_000212_350 Hb_000212_350 Hb_000086_060--Hb_000212_350 Hb_000696_340 Hb_000696_340 Hb_000221_210--Hb_000696_340 Hb_000445_180 Hb_000445_180 Hb_000221_210--Hb_000445_180 Hb_002137_020 Hb_002137_020 Hb_000221_210--Hb_002137_020 Hb_000221_210--Hb_005941_040 Hb_003057_100 Hb_003057_100 Hb_000221_210--Hb_003057_100 Hb_002284_010 Hb_002284_010 Hb_005941_040--Hb_002284_010 Hb_002163_020 Hb_002163_020 Hb_005941_040--Hb_002163_020 Hb_000635_180 Hb_000635_180 Hb_005941_040--Hb_000635_180 Hb_005941_040--Hb_000445_180 Hb_028995_040 Hb_028995_040 Hb_005941_040--Hb_028995_040 Hb_000705_210 Hb_000705_210 Hb_005941_040--Hb_000705_210 Hb_000005_330 Hb_000005_330 Hb_000261_440--Hb_000005_330 Hb_007666_020 Hb_007666_020 Hb_000261_440--Hb_007666_020 Hb_022092_120 Hb_022092_120 Hb_000261_440--Hb_022092_120 Hb_021254_030 Hb_021254_030 Hb_000261_440--Hb_021254_030 Hb_003151_050 Hb_003151_050 Hb_000261_440--Hb_003151_050 Hb_174865_030 Hb_174865_030 Hb_000987_120--Hb_174865_030 Hb_000307_090 Hb_000307_090 Hb_000987_120--Hb_000307_090 Hb_001722_100 Hb_001722_100 Hb_000987_120--Hb_001722_100 Hb_000522_080 Hb_000522_080 Hb_000987_120--Hb_000522_080 Hb_005736_060 Hb_005736_060 Hb_000987_120--Hb_005736_060 Hb_003185_080 Hb_003185_080 Hb_000987_120--Hb_003185_080 Hb_005551_050 Hb_005551_050 Hb_005653_060--Hb_005551_050 Hb_005653_060--Hb_000635_180 Hb_001564_080 Hb_001564_080 Hb_005653_060--Hb_001564_080 Hb_007426_180 Hb_007426_180 Hb_005653_060--Hb_007426_180 Hb_005653_060--Hb_000221_210 Hb_003747_220 Hb_003747_220 Hb_005653_060--Hb_003747_220 Hb_000754_040 Hb_000754_040 Hb_000212_350--Hb_000754_040 Hb_000212_350--Hb_002163_020 Hb_000340_260 Hb_000340_260 Hb_000212_350--Hb_000340_260 Hb_001983_020 Hb_001983_020 Hb_000212_350--Hb_001983_020 Hb_000212_350--Hb_005941_040 Hb_164926_030 Hb_164926_030 Hb_000212_350--Hb_164926_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
182.559 148.106 73.6114 67.2768 124.947 108.615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
436.794 203.866 147.361 66.2579 47.5973

CAGE analysis