Hb_000212_350

Information

Type -
Description -
Location Contig212: 345311-360867
Sequence    

Annotation

kegg
ID rcu:RCOM_1077800
description glucosamine-fructose-6-phosphate aminotransferase, putative (EC:2.6.1.16)
nr
ID XP_002514829.1
description glucosamine-fructose-6-phosphate aminotransferase, putative [Ricinus communis]
swissprot
ID O94808
description Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 OS=Homo sapiens GN=GFPT2 PE=1 SV=3
trembl
ID B9RM60
description Glucosamine-fructose-6-phosphate aminotransferase, putative OS=Ricinus communis GN=RCOM_1077800 PE=4 SV=1
Gene Ontology
ID GO:0004360
description glutamine--fructose-6-phosphate aminotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21973: 345387-354571 , PASA_asmbl_21974: 345387-354461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_350 0.0 - - glucosamine-fructose-6-phosphate aminotransferase, putative [Ricinus communis]
2 Hb_000754_040 0.0950011309 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
3 Hb_002163_020 0.0966727303 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
4 Hb_000340_260 0.1033790573 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
5 Hb_001983_020 0.1035103093 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
6 Hb_005941_040 0.1041311924 - - PREDICTED: CASP-like protein 5A2 [Jatropha curcas]
7 Hb_164926_030 0.1041486805 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
8 Hb_000221_210 0.1092329208 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
9 Hb_000111_360 0.1112978526 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011224_110 0.1140898165 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
11 Hb_000696_340 0.1192557735 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
12 Hb_000679_010 0.1202152117 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
13 Hb_000086_060 0.121651385 - - PREDICTED: TOM1-like protein 2 isoform X2 [Populus euphratica]
14 Hb_000069_600 0.1241487946 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
15 Hb_003057_100 0.1243562289 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
16 Hb_000915_090 0.1254343582 - - PREDICTED: transcription initiation factor TFIID subunit 14b [Jatropha curcas]
17 Hb_139518_030 0.1276196223 - - protein kinase atn1, putative [Ricinus communis]
18 Hb_006915_050 0.1276259182 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
19 Hb_002284_010 0.1284738249 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000445_180 0.1310480493 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]

Gene co-expression network

sample Hb_000212_350 Hb_000212_350 Hb_000754_040 Hb_000754_040 Hb_000212_350--Hb_000754_040 Hb_002163_020 Hb_002163_020 Hb_000212_350--Hb_002163_020 Hb_000340_260 Hb_000340_260 Hb_000212_350--Hb_000340_260 Hb_001983_020 Hb_001983_020 Hb_000212_350--Hb_001983_020 Hb_005941_040 Hb_005941_040 Hb_000212_350--Hb_005941_040 Hb_164926_030 Hb_164926_030 Hb_000212_350--Hb_164926_030 Hb_000111_360 Hb_000111_360 Hb_000754_040--Hb_000111_360 Hb_006915_050 Hb_006915_050 Hb_000754_040--Hb_006915_050 Hb_008695_210 Hb_008695_210 Hb_000754_040--Hb_008695_210 Hb_001277_330 Hb_001277_330 Hb_000754_040--Hb_001277_330 Hb_055062_030 Hb_055062_030 Hb_000754_040--Hb_055062_030 Hb_189003_080 Hb_189003_080 Hb_000754_040--Hb_189003_080 Hb_011224_110 Hb_011224_110 Hb_002163_020--Hb_011224_110 Hb_029866_060 Hb_029866_060 Hb_002163_020--Hb_029866_060 Hb_002284_010 Hb_002284_010 Hb_002163_020--Hb_002284_010 Hb_000915_090 Hb_000915_090 Hb_002163_020--Hb_000915_090 Hb_002163_020--Hb_005941_040 Hb_000240_090 Hb_000240_090 Hb_002163_020--Hb_000240_090 Hb_001832_010 Hb_001832_010 Hb_000340_260--Hb_001832_010 Hb_004724_340 Hb_004724_340 Hb_000340_260--Hb_004724_340 Hb_000696_340 Hb_000696_340 Hb_000340_260--Hb_000696_340 Hb_000061_320 Hb_000061_320 Hb_000340_260--Hb_000061_320 Hb_117134_010 Hb_117134_010 Hb_000340_260--Hb_117134_010 Hb_000069_600 Hb_000069_600 Hb_001983_020--Hb_000069_600 Hb_000679_010 Hb_000679_010 Hb_001983_020--Hb_000679_010 Hb_000212_330 Hb_000212_330 Hb_001983_020--Hb_000212_330 Hb_032202_190 Hb_032202_190 Hb_001983_020--Hb_032202_190 Hb_172426_040 Hb_172426_040 Hb_001983_020--Hb_172426_040 Hb_000958_110 Hb_000958_110 Hb_001983_020--Hb_000958_110 Hb_005941_040--Hb_002284_010 Hb_000635_180 Hb_000635_180 Hb_005941_040--Hb_000635_180 Hb_000445_180 Hb_000445_180 Hb_005941_040--Hb_000445_180 Hb_028995_040 Hb_028995_040 Hb_005941_040--Hb_028995_040 Hb_000705_210 Hb_000705_210 Hb_005941_040--Hb_000705_210 Hb_164926_030--Hb_000111_360 Hb_007672_050 Hb_007672_050 Hb_164926_030--Hb_007672_050 Hb_002496_050 Hb_002496_050 Hb_164926_030--Hb_002496_050 Hb_164926_030--Hb_006915_050 Hb_164926_030--Hb_000754_040 Hb_000630_070 Hb_000630_070 Hb_164926_030--Hb_000630_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.8521 39.1705 31.2179 18.9102 42.919 40.6267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
120.396 54.3644 83.7156 23.2931 28.8993

CAGE analysis