Hb_000005_330

Information

Type transcription factor
Description TF Family: ARF
Location Contig5: 435161-444760
Sequence    

Annotation

kegg
ID tcc:TCM_029410
description Auxin response factor 6 isoform 1
nr
ID XP_012072177.1
description PREDICTED: auxin response factor 6 isoform X2 [Jatropha curcas]
swissprot
ID Q6H6V4
description Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1
trembl
ID A0A067KP61
description Auxin response factor OS=Jatropha curcas GN=JCGZ_04659 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45714: 435292-442511
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_330 0.0 transcription factor TF Family: ARF PREDICTED: auxin response factor 6 isoform X2 [Jatropha curcas]
2 Hb_022092_120 0.1162569038 - - PREDICTED: uncharacterized protein LOC105646971 [Jatropha curcas]
3 Hb_000049_120 0.1211740304 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
4 Hb_000261_440 0.1216218229 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
5 Hb_005215_030 0.1313942755 - - FAD-dependent oxidoreductase family protein [Populus trichocarpa]
6 Hb_000589_270 0.1350098789 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
7 Hb_020178_070 0.1358095928 - - Protein Z, putative [Ricinus communis]
8 Hb_001195_690 0.1364763842 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
9 Hb_002411_200 0.1367736786 - - conserved hypothetical protein [Ricinus communis]
10 Hb_061802_020 0.1381381203 - - zinc finger family protein [Populus trichocarpa]
11 Hb_021254_030 0.1384972745 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
12 Hb_000174_070 0.1398554879 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
13 Hb_000445_180 0.141488175 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
14 Hb_000221_210 0.1417738459 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
15 Hb_004055_010 0.1429444719 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_003052_100 0.1437022694 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_002235_400 0.1439089595 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
18 Hb_000665_040 0.1439983682 - - PREDICTED: stress response protein NST1-like [Jatropha curcas]
19 Hb_000840_210 0.144549801 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
20 Hb_011689_040 0.147073289 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000005_330 Hb_000005_330 Hb_022092_120 Hb_022092_120 Hb_000005_330--Hb_022092_120 Hb_000049_120 Hb_000049_120 Hb_000005_330--Hb_000049_120 Hb_000261_440 Hb_000261_440 Hb_000005_330--Hb_000261_440 Hb_005215_030 Hb_005215_030 Hb_000005_330--Hb_005215_030 Hb_000589_270 Hb_000589_270 Hb_000005_330--Hb_000589_270 Hb_020178_070 Hb_020178_070 Hb_000005_330--Hb_020178_070 Hb_000221_210 Hb_000221_210 Hb_022092_120--Hb_000221_210 Hb_000395_080 Hb_000395_080 Hb_022092_120--Hb_000395_080 Hb_005396_050 Hb_005396_050 Hb_022092_120--Hb_005396_050 Hb_000237_080 Hb_000237_080 Hb_022092_120--Hb_000237_080 Hb_002137_020 Hb_002137_020 Hb_022092_120--Hb_002137_020 Hb_061802_020 Hb_061802_020 Hb_000049_120--Hb_061802_020 Hb_004724_420 Hb_004724_420 Hb_000049_120--Hb_004724_420 Hb_000840_210 Hb_000840_210 Hb_000049_120--Hb_000840_210 Hb_001248_130 Hb_001248_130 Hb_000049_120--Hb_001248_130 Hb_000754_040 Hb_000754_040 Hb_000049_120--Hb_000754_040 Hb_093084_050 Hb_093084_050 Hb_000049_120--Hb_093084_050 Hb_000086_060 Hb_000086_060 Hb_000261_440--Hb_000086_060 Hb_007666_020 Hb_007666_020 Hb_000261_440--Hb_007666_020 Hb_000261_440--Hb_022092_120 Hb_021254_030 Hb_021254_030 Hb_000261_440--Hb_021254_030 Hb_003151_050 Hb_003151_050 Hb_000261_440--Hb_003151_050 Hb_000483_360 Hb_000483_360 Hb_005215_030--Hb_000483_360 Hb_011689_040 Hb_011689_040 Hb_005215_030--Hb_011689_040 Hb_005215_030--Hb_000395_080 Hb_005539_030 Hb_005539_030 Hb_005215_030--Hb_005539_030 Hb_000556_020 Hb_000556_020 Hb_005215_030--Hb_000556_020 Hb_003728_030 Hb_003728_030 Hb_005215_030--Hb_003728_030 Hb_002007_310 Hb_002007_310 Hb_000589_270--Hb_002007_310 Hb_000665_040 Hb_000665_040 Hb_000589_270--Hb_000665_040 Hb_002368_050 Hb_002368_050 Hb_000589_270--Hb_002368_050 Hb_007908_020 Hb_007908_020 Hb_000589_270--Hb_007908_020 Hb_002681_020 Hb_002681_020 Hb_000589_270--Hb_002681_020 Hb_021068_050 Hb_021068_050 Hb_000589_270--Hb_021068_050 Hb_020178_070--Hb_001248_130 Hb_000567_260 Hb_000567_260 Hb_020178_070--Hb_000567_260 Hb_001671_020 Hb_001671_020 Hb_020178_070--Hb_001671_020 Hb_001881_020 Hb_001881_020 Hb_020178_070--Hb_001881_020 Hb_021650_030 Hb_021650_030 Hb_020178_070--Hb_021650_030 Hb_002411_200 Hb_002411_200 Hb_020178_070--Hb_002411_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
143.025 106.202 16.4578 54.0363 101.325 111.442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
271.799 69.793 178.243 54.3109 16.924

CAGE analysis