Hb_002007_310

Information

Type -
Description -
Location Contig2007: 206965-208607
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02350g
description POPTRDRAFT_662757; cyclin family protein
nr
ID XP_002319019.1
description cyclin family protein [Populus trichocarpa]
swissprot
ID Q84M91
description Probable microtubule-binding protein TANGLED OS=Arabidopsis thaliana GN=TAN PE=2 SV=1
trembl
ID B9I7T2
description Cyclin family protein OS=Populus trichocarpa GN=POPTR_0013s02350g PE=4 SV=1
Gene Ontology
ID GO:0005875
description probable microtubule-binding protein tangled

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_310 0.0 - - cyclin family protein [Populus trichocarpa]
2 Hb_000665_040 0.0862277373 - - PREDICTED: stress response protein NST1-like [Jatropha curcas]
3 Hb_003728_020 0.0883998507 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007508_070 0.0885301261 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
5 Hb_001439_120 0.0904216727 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000029_030 0.0926223987 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
7 Hb_033491_010 0.0954843758 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
8 Hb_006824_020 0.0963584608 - - PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]
9 Hb_002681_020 0.0974448097 - - aldose 1-epimerase, putative [Ricinus communis]
10 Hb_000556_080 0.09869767 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
11 Hb_000732_260 0.0994185882 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
12 Hb_002249_140 0.1007377072 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
13 Hb_000025_200 0.1010519426 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
14 Hb_000696_110 0.1012896158 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
15 Hb_000589_270 0.1015048939 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
16 Hb_011224_080 0.1028197156 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
17 Hb_001635_100 0.1031671668 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
18 Hb_004046_010 0.1032702254 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
19 Hb_000809_040 0.1033200322 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
20 Hb_000272_100 0.1034647966 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_002007_310 Hb_002007_310 Hb_000665_040 Hb_000665_040 Hb_002007_310--Hb_000665_040 Hb_003728_020 Hb_003728_020 Hb_002007_310--Hb_003728_020 Hb_007508_070 Hb_007508_070 Hb_002007_310--Hb_007508_070 Hb_001439_120 Hb_001439_120 Hb_002007_310--Hb_001439_120 Hb_000029_030 Hb_000029_030 Hb_002007_310--Hb_000029_030 Hb_033491_010 Hb_033491_010 Hb_002007_310--Hb_033491_010 Hb_002411_200 Hb_002411_200 Hb_000665_040--Hb_002411_200 Hb_000091_090 Hb_000091_090 Hb_000665_040--Hb_000091_090 Hb_003151_050 Hb_003151_050 Hb_000665_040--Hb_003151_050 Hb_000567_260 Hb_000567_260 Hb_000665_040--Hb_000567_260 Hb_000665_040--Hb_007508_070 Hb_005527_050 Hb_005527_050 Hb_003728_020--Hb_005527_050 Hb_150069_020 Hb_150069_020 Hb_003728_020--Hb_150069_020 Hb_000032_570 Hb_000032_570 Hb_003728_020--Hb_000032_570 Hb_000012_090 Hb_000012_090 Hb_003728_020--Hb_000012_090 Hb_001811_150 Hb_001811_150 Hb_003728_020--Hb_001811_150 Hb_000322_050 Hb_000322_050 Hb_003728_020--Hb_000322_050 Hb_015001_020 Hb_015001_020 Hb_007508_070--Hb_015001_020 Hb_004812_010 Hb_004812_010 Hb_007508_070--Hb_004812_010 Hb_001366_190 Hb_001366_190 Hb_007508_070--Hb_001366_190 Hb_001454_210 Hb_001454_210 Hb_007508_070--Hb_001454_210 Hb_007508_070--Hb_000567_260 Hb_028872_140 Hb_028872_140 Hb_007508_070--Hb_028872_140 Hb_007919_050 Hb_007919_050 Hb_001439_120--Hb_007919_050 Hb_000556_080 Hb_000556_080 Hb_001439_120--Hb_000556_080 Hb_001439_120--Hb_000029_030 Hb_010638_020 Hb_010638_020 Hb_001439_120--Hb_010638_020 Hb_182026_020 Hb_182026_020 Hb_001439_120--Hb_182026_020 Hb_021068_050 Hb_021068_050 Hb_001439_120--Hb_021068_050 Hb_002368_050 Hb_002368_050 Hb_000029_030--Hb_002368_050 Hb_006693_030 Hb_006693_030 Hb_000029_030--Hb_006693_030 Hb_001776_110 Hb_001776_110 Hb_000029_030--Hb_001776_110 Hb_000975_290 Hb_000975_290 Hb_000029_030--Hb_000975_290 Hb_000029_030--Hb_001454_210 Hb_011224_080 Hb_011224_080 Hb_000029_030--Hb_011224_080 Hb_001369_060 Hb_001369_060 Hb_033491_010--Hb_001369_060 Hb_000732_260 Hb_000732_260 Hb_033491_010--Hb_000732_260 Hb_000272_100 Hb_000272_100 Hb_033491_010--Hb_000272_100 Hb_000282_060 Hb_000282_060 Hb_033491_010--Hb_000282_060 Hb_000784_090 Hb_000784_090 Hb_033491_010--Hb_000784_090 Hb_002215_050 Hb_002215_050 Hb_033491_010--Hb_002215_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05047 0.468068 0.130995 0.383336 2.10972 1.51
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.20624 1.19539 1.77748 0.666383 0.395172

CAGE analysis