Hb_004812_010

Information

Type -
Description -
Location Contig4812: 13467-19342
Sequence    

Annotation

kegg
ID tcc:TCM_021978
description ARF-GAP domain 7 isoform 1
nr
ID XP_012092892.1
description PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
swissprot
ID O80925
description ADP-ribosylation factor GTPase-activating protein AGD7 OS=Arabidopsis thaliana GN=AGD7 PE=1 SV=1
trembl
ID A0A067JJK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00032 PE=4 SV=1
Gene Ontology
ID GO:0005096
description probable adp-ribosylation factor gtpase-activating protein agd6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004812_010 0.0 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
2 Hb_001584_330 0.0648487888 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
3 Hb_001138_050 0.068605703 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
4 Hb_007508_070 0.075961592 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
5 Hb_006922_100 0.0763552855 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
6 Hb_002685_140 0.0782849654 - - PREDICTED: membrin-11 [Jatropha curcas]
7 Hb_001377_290 0.0790791511 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
8 Hb_000120_950 0.0791963983 - - PREDICTED: protein GRIP [Jatropha curcas]
9 Hb_007908_020 0.0792615399 - - zinc finger family protein [Populus trichocarpa]
10 Hb_001862_190 0.0805679354 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
11 Hb_000398_180 0.0809269118 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
12 Hb_007894_140 0.0826809486 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
13 Hb_000030_010 0.0835978211 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
14 Hb_001366_190 0.0841975601 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
15 Hb_011689_080 0.0853088166 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
16 Hb_033153_050 0.0861316365 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
17 Hb_001195_690 0.0862426889 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
18 Hb_001604_010 0.0863204588 - - 14-3-3 protein, putative [Ricinus communis]
19 Hb_001454_210 0.0869391402 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
20 Hb_001623_420 0.0876705633 - - nucleotide binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004812_010 Hb_004812_010 Hb_001584_330 Hb_001584_330 Hb_004812_010--Hb_001584_330 Hb_001138_050 Hb_001138_050 Hb_004812_010--Hb_001138_050 Hb_007508_070 Hb_007508_070 Hb_004812_010--Hb_007508_070 Hb_006922_100 Hb_006922_100 Hb_004812_010--Hb_006922_100 Hb_002685_140 Hb_002685_140 Hb_004812_010--Hb_002685_140 Hb_001377_290 Hb_001377_290 Hb_004812_010--Hb_001377_290 Hb_001623_420 Hb_001623_420 Hb_001584_330--Hb_001623_420 Hb_005306_110 Hb_005306_110 Hb_001584_330--Hb_005306_110 Hb_006400_040 Hb_006400_040 Hb_001584_330--Hb_006400_040 Hb_000120_950 Hb_000120_950 Hb_001584_330--Hb_000120_950 Hb_000139_410 Hb_000139_410 Hb_001584_330--Hb_000139_410 Hb_000398_180 Hb_000398_180 Hb_001138_050--Hb_000398_180 Hb_000720_120 Hb_000720_120 Hb_001138_050--Hb_000720_120 Hb_001138_050--Hb_001377_290 Hb_005357_030 Hb_005357_030 Hb_001138_050--Hb_005357_030 Hb_001259_090 Hb_001259_090 Hb_001138_050--Hb_001259_090 Hb_019253_020 Hb_019253_020 Hb_001138_050--Hb_019253_020 Hb_015001_020 Hb_015001_020 Hb_007508_070--Hb_015001_020 Hb_001366_190 Hb_001366_190 Hb_007508_070--Hb_001366_190 Hb_001454_210 Hb_001454_210 Hb_007508_070--Hb_001454_210 Hb_000567_260 Hb_000567_260 Hb_007508_070--Hb_000567_260 Hb_028872_140 Hb_028872_140 Hb_007508_070--Hb_028872_140 Hb_005663_060 Hb_005663_060 Hb_006922_100--Hb_005663_060 Hb_004055_030 Hb_004055_030 Hb_006922_100--Hb_004055_030 Hb_000020_190 Hb_000020_190 Hb_006922_100--Hb_000020_190 Hb_001862_190 Hb_001862_190 Hb_006922_100--Hb_001862_190 Hb_007441_120 Hb_007441_120 Hb_006922_100--Hb_007441_120 Hb_001199_020 Hb_001199_020 Hb_006922_100--Hb_001199_020 Hb_000327_120 Hb_000327_120 Hb_002685_140--Hb_000327_120 Hb_001439_150 Hb_001439_150 Hb_002685_140--Hb_001439_150 Hb_011689_080 Hb_011689_080 Hb_002685_140--Hb_011689_080 Hb_002685_140--Hb_001623_420 Hb_001635_170 Hb_001635_170 Hb_002685_140--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_002685_140--Hb_007576_040 Hb_001377_290--Hb_000398_180 Hb_001377_290--Hb_011689_080 Hb_003392_040 Hb_003392_040 Hb_001377_290--Hb_003392_040 Hb_004195_160 Hb_004195_160 Hb_001377_290--Hb_004195_160 Hb_002078_150 Hb_002078_150 Hb_001377_290--Hb_002078_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.7076 21.7292 11.7466 17.8353 46.5832 40.8948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.5568 37.5089 42.3972 18.2984 14.4223

CAGE analysis