Hb_001439_120

Information

Type -
Description -
Location Contig1439: 113292-123536
Sequence    

Annotation

kegg
ID rcu:RCOM_0538000
description hypothetical protein
nr
ID XP_002530016.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GUH7
description CSC1-like protein HYP1 OS=Arabidopsis thaliana GN=HYP1 PE=2 SV=1
trembl
ID B9SVJ7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0538000 PE=4 SV=1
Gene Ontology
ID GO:0016020
description csc1-like protein hyp1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11591: 113437-114463 , PASA_asmbl_11592: 114856-119619 , PASA_asmbl_11593: 119719-123066 , PASA_asmbl_11595: 123068-123289
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007919_050 0.0695308644 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
3 Hb_000556_080 0.0839727196 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
4 Hb_000029_030 0.0841389059 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
5 Hb_010638_020 0.0842555278 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
6 Hb_182026_020 0.0854923002 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
7 Hb_021068_050 0.0857634643 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
8 Hb_000025_200 0.0869451705 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
9 Hb_006569_020 0.0900569207 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
10 Hb_002007_310 0.0904216727 - - cyclin family protein [Populus trichocarpa]
11 Hb_011224_080 0.0922785491 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
12 Hb_010174_130 0.0939627397 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
13 Hb_002368_050 0.0960845758 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006824_020 0.0961108391 - - PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]
15 Hb_000402_200 0.096491403 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
16 Hb_026988_020 0.101714971 - - outward rectifying K+ channel [Hevea brasiliensis]
17 Hb_002553_020 0.1022613364 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004662_030 0.1026525013 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
19 Hb_000085_310 0.1030008596 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
20 Hb_000956_010 0.103823382 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001439_120 Hb_001439_120 Hb_007919_050 Hb_007919_050 Hb_001439_120--Hb_007919_050 Hb_000556_080 Hb_000556_080 Hb_001439_120--Hb_000556_080 Hb_000029_030 Hb_000029_030 Hb_001439_120--Hb_000029_030 Hb_010638_020 Hb_010638_020 Hb_001439_120--Hb_010638_020 Hb_182026_020 Hb_182026_020 Hb_001439_120--Hb_182026_020 Hb_021068_050 Hb_021068_050 Hb_001439_120--Hb_021068_050 Hb_006569_020 Hb_006569_020 Hb_007919_050--Hb_006569_020 Hb_159558_030 Hb_159558_030 Hb_007919_050--Hb_159558_030 Hb_000500_130 Hb_000500_130 Hb_007919_050--Hb_000500_130 Hb_158092_070 Hb_158092_070 Hb_007919_050--Hb_158092_070 Hb_022250_040 Hb_022250_040 Hb_007919_050--Hb_022250_040 Hb_000556_080--Hb_182026_020 Hb_001135_160 Hb_001135_160 Hb_000556_080--Hb_001135_160 Hb_011224_080 Hb_011224_080 Hb_000556_080--Hb_011224_080 Hb_000556_080--Hb_010638_020 Hb_012340_010 Hb_012340_010 Hb_000556_080--Hb_012340_010 Hb_002368_050 Hb_002368_050 Hb_000029_030--Hb_002368_050 Hb_006693_030 Hb_006693_030 Hb_000029_030--Hb_006693_030 Hb_001776_110 Hb_001776_110 Hb_000029_030--Hb_001776_110 Hb_000975_290 Hb_000975_290 Hb_000029_030--Hb_000975_290 Hb_001454_210 Hb_001454_210 Hb_000029_030--Hb_001454_210 Hb_000029_030--Hb_011224_080 Hb_007575_040 Hb_007575_040 Hb_010638_020--Hb_007575_040 Hb_010638_020--Hb_182026_020 Hb_000186_240 Hb_000186_240 Hb_010638_020--Hb_000186_240 Hb_010638_020--Hb_011224_080 Hb_002609_110 Hb_002609_110 Hb_182026_020--Hb_002609_110 Hb_000418_100 Hb_000418_100 Hb_182026_020--Hb_000418_100 Hb_011918_080 Hb_011918_080 Hb_182026_020--Hb_011918_080 Hb_002686_270 Hb_002686_270 Hb_182026_020--Hb_002686_270 Hb_000376_050 Hb_000376_050 Hb_021068_050--Hb_000376_050 Hb_002603_100 Hb_002603_100 Hb_021068_050--Hb_002603_100 Hb_024835_030 Hb_024835_030 Hb_021068_050--Hb_024835_030 Hb_021068_050--Hb_022250_040 Hb_004012_010 Hb_004012_010 Hb_021068_050--Hb_004012_010 Hb_026198_050 Hb_026198_050 Hb_021068_050--Hb_026198_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.0212 5.36873 3.54682 11.2508 40.7064 27.7605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.1429 28.8772 32.3555 8.43143 4.09038

CAGE analysis