Hb_005551_050

Information

Type -
Description -
Location Contig5551: 54353-58101
Sequence    

Annotation

kegg
ID rcu:RCOM_0437760
description (Di)nucleoside polyphosphate hydrolase, putative
nr
ID XP_012074331.1
description PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
swissprot
ID Q9FNH4
description Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana GN=NUDT27 PE=1 SV=1
trembl
ID A0A067KJ14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08766 PE=3 SV=1
Gene Ontology
ID GO:0016787
description nudix hydrolase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48495: 54435-58041
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005551_050 0.0 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
2 Hb_007426_180 0.076798747 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
3 Hb_003376_350 0.0898099677 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
4 Hb_005653_060 0.1011994325 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
5 Hb_000679_090 0.1092388001 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
6 Hb_001564_080 0.1119149115 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
7 Hb_004032_270 0.1147235996 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
8 Hb_000120_330 0.1158895302 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004994_140 0.116429629 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]
10 Hb_002374_310 0.1167808202 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
11 Hb_001817_160 0.1175017896 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000189_560 0.1179731032 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
13 Hb_001195_600 0.1179992111 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
14 Hb_002813_040 0.1186826796 - - PREDICTED: PRA1 family protein G2 [Jatropha curcas]
15 Hb_000696_150 0.119455495 - - PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Jatropha curcas]
16 Hb_000696_090 0.1214696541 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
17 Hb_007590_050 0.1218856587 - - NudC domain-containing protein, putative [Ricinus communis]
18 Hb_000500_100 0.1224056646 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
19 Hb_004032_360 0.1229424226 - - PREDICTED: uncharacterized protein LOC103403885 [Malus domestica]
20 Hb_007532_030 0.12512458 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]

Gene co-expression network

sample Hb_005551_050 Hb_005551_050 Hb_007426_180 Hb_007426_180 Hb_005551_050--Hb_007426_180 Hb_003376_350 Hb_003376_350 Hb_005551_050--Hb_003376_350 Hb_005653_060 Hb_005653_060 Hb_005551_050--Hb_005653_060 Hb_000679_090 Hb_000679_090 Hb_005551_050--Hb_000679_090 Hb_001564_080 Hb_001564_080 Hb_005551_050--Hb_001564_080 Hb_004032_270 Hb_004032_270 Hb_005551_050--Hb_004032_270 Hb_007426_180--Hb_000679_090 Hb_001552_020 Hb_001552_020 Hb_007426_180--Hb_001552_020 Hb_000500_100 Hb_000500_100 Hb_007426_180--Hb_000500_100 Hb_002256_030 Hb_002256_030 Hb_007426_180--Hb_002256_030 Hb_007426_180--Hb_003376_350 Hb_004907_110 Hb_004907_110 Hb_003376_350--Hb_004907_110 Hb_002631_060 Hb_002631_060 Hb_003376_350--Hb_002631_060 Hb_000926_330 Hb_000926_330 Hb_003376_350--Hb_000926_330 Hb_004994_140 Hb_004994_140 Hb_003376_350--Hb_004994_140 Hb_000189_560 Hb_000189_560 Hb_003376_350--Hb_000189_560 Hb_007532_030 Hb_007532_030 Hb_003376_350--Hb_007532_030 Hb_000635_180 Hb_000635_180 Hb_005653_060--Hb_000635_180 Hb_005653_060--Hb_001564_080 Hb_005653_060--Hb_007426_180 Hb_000221_210 Hb_000221_210 Hb_005653_060--Hb_000221_210 Hb_003747_220 Hb_003747_220 Hb_005653_060--Hb_003747_220 Hb_000696_150 Hb_000696_150 Hb_000679_090--Hb_000696_150 Hb_000679_090--Hb_004994_140 Hb_000679_090--Hb_003376_350 Hb_012107_060 Hb_012107_060 Hb_000679_090--Hb_012107_060 Hb_000117_090 Hb_000117_090 Hb_000679_090--Hb_000117_090 Hb_001894_050 Hb_001894_050 Hb_001564_080--Hb_001894_050 Hb_189208_020 Hb_189208_020 Hb_001564_080--Hb_189208_020 Hb_001817_160 Hb_001817_160 Hb_001564_080--Hb_001817_160 Hb_115241_010 Hb_115241_010 Hb_001564_080--Hb_115241_010 Hb_009838_050 Hb_009838_050 Hb_004032_270--Hb_009838_050 Hb_001318_030 Hb_001318_030 Hb_004032_270--Hb_001318_030 Hb_001610_110 Hb_001610_110 Hb_004032_270--Hb_001610_110 Hb_076693_020 Hb_076693_020 Hb_004032_270--Hb_076693_020 Hb_000567_210 Hb_000567_210 Hb_004032_270--Hb_000567_210 Hb_012807_050 Hb_012807_050 Hb_004032_270--Hb_012807_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6617 36.947 8.42038 12.3189 17.3539 16.2186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.6774 35.6044 27.2721 8.24882 9.62858

CAGE analysis