Hb_000500_100

Information

Type -
Description -
Location Contig500: 69254-72510
Sequence    

Annotation

kegg
ID rcu:RCOM_1502430
description methionine sulfoxide reductase, putative (EC:1.8.4.11)
nr
ID NP_001294898.1
description peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
swissprot
ID P54150
description Peptide methionine sulfoxide reductase A4, chloroplastic OS=Arabidopsis thaliana GN=MSR4 PE=1 SV=2
trembl
ID A0A067JEZ7
description Methionine sulfoxide reductase OS=Jatropha curcas GN=JCGZ_26312 PE=2 SV=1
Gene Ontology
ID GO:0008113
description peptide methionine sulfoxide reductase a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45746: 69323-72437
cDNA
(Sanger)
(ID:Location)		 045_I09.ab1: 69577-72439

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_100 0.0 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
2 Hb_007426_180 0.0872826723 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
3 Hb_005116_160 0.0903380576 transcription factor TF Family: TRAF -
4 Hb_001552_020 0.0994625052 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
5 Hb_002184_110 0.1000355609 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
6 Hb_005463_100 0.1007767914 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
7 Hb_002256_030 0.1010324319 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000684_470 0.1014449358 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
9 Hb_002110_150 0.1018311584 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
10 Hb_000696_090 0.1025865713 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
11 Hb_000227_120 0.1030423761 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004032_360 0.1045486556 - - PREDICTED: uncharacterized protein LOC103403885 [Malus domestica]
13 Hb_002739_100 0.1049936946 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
14 Hb_002888_030 0.1077614128 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
15 Hb_001369_730 0.1079777014 - - F5O11.10, putative isoform 1 [Theobroma cacao]
16 Hb_017358_030 0.1090333792 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
17 Hb_000096_070 0.1090708753 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
18 Hb_004800_080 0.1091463998 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
19 Hb_003142_020 0.1093445744 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
20 Hb_009382_010 0.1098575816 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000500_100 Hb_000500_100 Hb_007426_180 Hb_007426_180 Hb_000500_100--Hb_007426_180 Hb_005116_160 Hb_005116_160 Hb_000500_100--Hb_005116_160 Hb_001552_020 Hb_001552_020 Hb_000500_100--Hb_001552_020 Hb_002184_110 Hb_002184_110 Hb_000500_100--Hb_002184_110 Hb_005463_100 Hb_005463_100 Hb_000500_100--Hb_005463_100 Hb_002256_030 Hb_002256_030 Hb_000500_100--Hb_002256_030 Hb_005551_050 Hb_005551_050 Hb_007426_180--Hb_005551_050 Hb_000679_090 Hb_000679_090 Hb_007426_180--Hb_000679_090 Hb_007426_180--Hb_001552_020 Hb_007426_180--Hb_002256_030 Hb_003376_350 Hb_003376_350 Hb_007426_180--Hb_003376_350 Hb_000684_470 Hb_000684_470 Hb_005116_160--Hb_000684_470 Hb_000699_030 Hb_000699_030 Hb_005116_160--Hb_000699_030 Hb_000732_010 Hb_000732_010 Hb_005116_160--Hb_000732_010 Hb_001307_220 Hb_001307_220 Hb_005116_160--Hb_001307_220 Hb_001369_730 Hb_001369_730 Hb_005116_160--Hb_001369_730 Hb_005116_160--Hb_005463_100 Hb_028995_040 Hb_028995_040 Hb_001552_020--Hb_028995_040 Hb_029866_090 Hb_029866_090 Hb_001552_020--Hb_029866_090 Hb_002739_100 Hb_002739_100 Hb_001552_020--Hb_002739_100 Hb_000656_400 Hb_000656_400 Hb_001552_020--Hb_000656_400 Hb_001552_020--Hb_002256_030 Hb_002346_020 Hb_002346_020 Hb_001552_020--Hb_002346_020 Hb_092462_020 Hb_092462_020 Hb_002184_110--Hb_092462_020 Hb_011930_020 Hb_011930_020 Hb_002184_110--Hb_011930_020 Hb_003142_030 Hb_003142_030 Hb_002184_110--Hb_003142_030 Hb_002184_110--Hb_001307_220 Hb_006478_040 Hb_006478_040 Hb_002184_110--Hb_006478_040 Hb_000729_030 Hb_000729_030 Hb_002184_110--Hb_000729_030 Hb_002046_180 Hb_002046_180 Hb_005463_100--Hb_002046_180 Hb_012019_010 Hb_012019_010 Hb_005463_100--Hb_012019_010 Hb_002110_150 Hb_002110_150 Hb_005463_100--Hb_002110_150 Hb_005463_100--Hb_000684_470 Hb_000003_250 Hb_000003_250 Hb_005463_100--Hb_000003_250 Hb_009767_110 Hb_009767_110 Hb_005463_100--Hb_009767_110 Hb_036790_100 Hb_036790_100 Hb_002256_030--Hb_036790_100 Hb_031527_040 Hb_031527_040 Hb_002256_030--Hb_031527_040 Hb_004032_360 Hb_004032_360 Hb_002256_030--Hb_004032_360 Hb_001242_060 Hb_001242_060 Hb_002256_030--Hb_001242_060 Hb_002256_030--Hb_002739_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
115.842 135.578 67.5121 50.292 113.009 66.5256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
146.216 140.297 129.331 51.9495 103.197

CAGE analysis