Hb_002184_110

Information

Type transcription factor
Description TF Family: bZIP
Location Contig2184: 186242-193178
Sequence    

Annotation

kegg
ID rcu:RCOM_1590260
description DNA binding protein, putative
nr
ID XP_012071654.1
description PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
swissprot
ID Q9M7Q4
description ABSCISIC ACID-INSENSITIVE 5-like protein 5 OS=Arabidopsis thaliana GN=ABF2 PE=1 SV=1
trembl
ID A0A067L1G8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04255 PE=4 SV=1
Gene Ontology
ID GO:0003700
description abscisic acid-insensitive 5-like protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22518: 186533-192428 , PASA_asmbl_22519: 189255-189688 , PASA_asmbl_22520: 190400-190649 , PASA_asmbl_22521: 192670-192929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002184_110 0.0 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
2 Hb_092462_020 0.079498023 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
3 Hb_011930_020 0.0891100777 - - PREDICTED: uncharacterized protein LOC105649787 isoform X1 [Jatropha curcas]
4 Hb_003142_030 0.0923921575 - - PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Jatropha curcas]
5 Hb_001307_220 0.0934656655 - - PREDICTED: glutathione S-transferase omega-like 2 [Jatropha curcas]
6 Hb_006478_040 0.0938751109 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
7 Hb_000729_030 0.0948779701 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
8 Hb_000059_380 0.0968605055 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
9 Hb_001546_080 0.0970979292 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
10 Hb_005116_160 0.0975611978 transcription factor TF Family: TRAF -
11 Hb_000500_100 0.1000355609 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
12 Hb_003001_080 0.1026259237 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
13 Hb_000317_050 0.1033672303 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
14 Hb_000318_250 0.1047568031 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
15 Hb_005489_020 0.1062359113 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007533_010 0.1067389857 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
17 Hb_000261_020 0.1093249337 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
18 Hb_000010_190 0.1097530154 - - PREDICTED: protein-L-isoaspartate O-methyltransferase 1 isoform X2 [Jatropha curcas]
19 Hb_004223_030 0.1106590554 - - PREDICTED: uncharacterized protein LOC105635347 isoform X1 [Jatropha curcas]
20 Hb_000699_030 0.1122456675 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002184_110 Hb_002184_110 Hb_092462_020 Hb_092462_020 Hb_002184_110--Hb_092462_020 Hb_011930_020 Hb_011930_020 Hb_002184_110--Hb_011930_020 Hb_003142_030 Hb_003142_030 Hb_002184_110--Hb_003142_030 Hb_001307_220 Hb_001307_220 Hb_002184_110--Hb_001307_220 Hb_006478_040 Hb_006478_040 Hb_002184_110--Hb_006478_040 Hb_000729_030 Hb_000729_030 Hb_002184_110--Hb_000729_030 Hb_004724_270 Hb_004724_270 Hb_092462_020--Hb_004724_270 Hb_092462_020--Hb_000729_030 Hb_002043_030 Hb_002043_030 Hb_092462_020--Hb_002043_030 Hb_000010_190 Hb_000010_190 Hb_092462_020--Hb_000010_190 Hb_000161_130 Hb_000161_130 Hb_092462_020--Hb_000161_130 Hb_007007_120 Hb_007007_120 Hb_011930_020--Hb_007007_120 Hb_007590_020 Hb_007590_020 Hb_011930_020--Hb_007590_020 Hb_012395_230 Hb_012395_230 Hb_011930_020--Hb_012395_230 Hb_004837_180 Hb_004837_180 Hb_011930_020--Hb_004837_180 Hb_000230_400 Hb_000230_400 Hb_011930_020--Hb_000230_400 Hb_003647_140 Hb_003647_140 Hb_011930_020--Hb_003647_140 Hb_000696_090 Hb_000696_090 Hb_003142_030--Hb_000696_090 Hb_152175_010 Hb_152175_010 Hb_003142_030--Hb_152175_010 Hb_003001_080 Hb_003001_080 Hb_003142_030--Hb_003001_080 Hb_000424_060 Hb_000424_060 Hb_003142_030--Hb_000424_060 Hb_001227_030 Hb_001227_030 Hb_003142_030--Hb_001227_030 Hb_003929_280 Hb_003929_280 Hb_003142_030--Hb_003929_280 Hb_000317_050 Hb_000317_050 Hb_001307_220--Hb_000317_050 Hb_005116_160 Hb_005116_160 Hb_001307_220--Hb_005116_160 Hb_000318_250 Hb_000318_250 Hb_001307_220--Hb_000318_250 Hb_001546_080 Hb_001546_080 Hb_001307_220--Hb_001546_080 Hb_000684_470 Hb_000684_470 Hb_001307_220--Hb_000684_470 Hb_000340_400 Hb_000340_400 Hb_006478_040--Hb_000340_400 Hb_006478_040--Hb_001546_080 Hb_003030_060 Hb_003030_060 Hb_006478_040--Hb_003030_060 Hb_006478_040--Hb_000318_250 Hb_005116_060 Hb_005116_060 Hb_006478_040--Hb_005116_060 Hb_001470_030 Hb_001470_030 Hb_006478_040--Hb_001470_030 Hb_000869_080 Hb_000869_080 Hb_000729_030--Hb_000869_080 Hb_000261_020 Hb_000261_020 Hb_000729_030--Hb_000261_020 Hb_000336_150 Hb_000336_150 Hb_000729_030--Hb_000336_150 Hb_013358_040 Hb_013358_040 Hb_000729_030--Hb_013358_040 Hb_003124_150 Hb_003124_150 Hb_000729_030--Hb_003124_150 Hb_010368_010 Hb_010368_010 Hb_000729_030--Hb_010368_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5504 30.8821 26.0225 10.3214 19.4797 19.4232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.1024 32.3395 21.0231 12.7284 29.4374

CAGE analysis