Hb_004724_270

Information

Type -
Description -
Location Contig4724: 181716-182456
Sequence    

Annotation

kegg
ID rcu:RCOM_1281850
description hypothetical protein
nr
ID KDP34425.1
description hypothetical protein JCGZ_12706 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQ46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12706 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44363: 182089-184800 , PASA_asmbl_44364: 181667-182623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_270 0.0 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
2 Hb_005211_180 0.0801578163 - - Transmembrane protein TPARL, putative [Ricinus communis]
3 Hb_008013_050 0.0911907926 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
4 Hb_010368_010 0.0986533775 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
5 Hb_005245_080 0.0992780676 - - PREDICTED: uncharacterized protein LOC105643645 isoform X2 [Jatropha curcas]
6 Hb_092462_020 0.1014107048 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
7 Hb_003124_150 0.1043733986 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
8 Hb_000457_180 0.1058227386 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
9 Hb_006153_110 0.108061361 - - dimethylaniline monooxygenase, putative [Ricinus communis]
10 Hb_000336_150 0.1086156918 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
11 Hb_001545_160 0.1097344743 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC102615208 isoform X1 [Citrus sinensis]
12 Hb_150651_040 0.10979533 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
13 Hb_010098_050 0.1113620371 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
14 Hb_012565_070 0.1114133247 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
15 Hb_181729_010 0.1116614639 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X1 [Jatropha curcas]
16 Hb_000729_030 0.1120265003 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
17 Hb_000069_380 0.1124817619 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
18 Hb_011457_150 0.1132401485 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
19 Hb_019280_050 0.1145934375 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
20 Hb_001269_610 0.1146916878 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004724_270 Hb_004724_270 Hb_005211_180 Hb_005211_180 Hb_004724_270--Hb_005211_180 Hb_008013_050 Hb_008013_050 Hb_004724_270--Hb_008013_050 Hb_010368_010 Hb_010368_010 Hb_004724_270--Hb_010368_010 Hb_005245_080 Hb_005245_080 Hb_004724_270--Hb_005245_080 Hb_092462_020 Hb_092462_020 Hb_004724_270--Hb_092462_020 Hb_003124_150 Hb_003124_150 Hb_004724_270--Hb_003124_150 Hb_005211_180--Hb_092462_020 Hb_000321_160 Hb_000321_160 Hb_005211_180--Hb_000321_160 Hb_000164_100 Hb_000164_100 Hb_005211_180--Hb_000164_100 Hb_012565_070 Hb_012565_070 Hb_005211_180--Hb_012565_070 Hb_005211_180--Hb_003124_150 Hb_006059_050 Hb_006059_050 Hb_008013_050--Hb_006059_050 Hb_002301_150 Hb_002301_150 Hb_008013_050--Hb_002301_150 Hb_003502_060 Hb_003502_060 Hb_008013_050--Hb_003502_060 Hb_003151_040 Hb_003151_040 Hb_008013_050--Hb_003151_040 Hb_010098_050 Hb_010098_050 Hb_008013_050--Hb_010098_050 Hb_000030_030 Hb_000030_030 Hb_008013_050--Hb_000030_030 Hb_013358_040 Hb_013358_040 Hb_010368_010--Hb_013358_040 Hb_010368_010--Hb_008013_050 Hb_000699_030 Hb_000699_030 Hb_010368_010--Hb_000699_030 Hb_000729_030 Hb_000729_030 Hb_010368_010--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_010368_010--Hb_000336_150 Hb_000069_380 Hb_000069_380 Hb_010368_010--Hb_000069_380 Hb_150651_040 Hb_150651_040 Hb_005245_080--Hb_150651_040 Hb_089995_010 Hb_089995_010 Hb_005245_080--Hb_089995_010 Hb_005391_040 Hb_005391_040 Hb_005245_080--Hb_005391_040 Hb_005245_080--Hb_008013_050 Hb_000030_290 Hb_000030_290 Hb_005245_080--Hb_000030_290 Hb_002184_110 Hb_002184_110 Hb_092462_020--Hb_002184_110 Hb_092462_020--Hb_000729_030 Hb_002043_030 Hb_002043_030 Hb_092462_020--Hb_002043_030 Hb_000010_190 Hb_000010_190 Hb_092462_020--Hb_000010_190 Hb_000161_130 Hb_000161_130 Hb_092462_020--Hb_000161_130 Hb_000310_020 Hb_000310_020 Hb_003124_150--Hb_000310_020 Hb_000928_070 Hb_000928_070 Hb_003124_150--Hb_000928_070 Hb_000505_130 Hb_000505_130 Hb_003124_150--Hb_000505_130 Hb_003124_150--Hb_000729_030 Hb_003124_150--Hb_000336_150 Hb_000580_020 Hb_000580_020 Hb_003124_150--Hb_000580_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.2385 34.0165 50.2248 30.9614 20.0051 22.4375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.8935 51.2857 33.1569 22.9899 35.9513

CAGE analysis