Hb_005245_080

Information

Type -
Description -
Location Contig5245: 83292-91322
Sequence    

Annotation

kegg
ID crb:CARUB_v10014434mg
description hypothetical protein
nr
ID XP_012084235.1
description PREDICTED: uncharacterized protein LOC105643645 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LKF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15045 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zz-type zinc finger-containing 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46927: 83468-87487 , PASA_asmbl_46928: 83409-91099 , PASA_asmbl_46929: 83308-86579 , PASA_asmbl_46930: 88826-89242 , PASA_asmbl_46931: 88059-88333
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005245_080 0.0 - - PREDICTED: uncharacterized protein LOC105643645 isoform X2 [Jatropha curcas]
2 Hb_150651_040 0.0611881126 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
3 Hb_089995_010 0.0836322887 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
4 Hb_005391_040 0.0874940746 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]
5 Hb_008013_050 0.0966733241 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
6 Hb_000030_290 0.0977080892 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
7 Hb_004724_270 0.0992780676 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
8 Hb_001124_090 0.0993570839 - - acyl carrier protein, putative [Ricinus communis]
9 Hb_010098_050 0.1017224027 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
10 Hb_000331_470 0.1037602193 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
11 Hb_000525_020 0.1066996605 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_006059_050 0.1069684344 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
13 Hb_000340_570 0.1073596834 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
14 Hb_006153_110 0.1090300306 - - dimethylaniline monooxygenase, putative [Ricinus communis]
15 Hb_000457_180 0.1098891 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
16 Hb_000529_030 0.1121523147 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000174_210 0.1133413194 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
18 Hb_004102_070 0.1135968924 - - Cytochrome c oxidase subunit 5b-2, mitochondrial -like protein [Gossypium arboreum]
19 Hb_000362_190 0.1144963214 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
20 Hb_001269_610 0.1157133447 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005245_080 Hb_005245_080 Hb_150651_040 Hb_150651_040 Hb_005245_080--Hb_150651_040 Hb_089995_010 Hb_089995_010 Hb_005245_080--Hb_089995_010 Hb_005391_040 Hb_005391_040 Hb_005245_080--Hb_005391_040 Hb_008013_050 Hb_008013_050 Hb_005245_080--Hb_008013_050 Hb_000030_290 Hb_000030_290 Hb_005245_080--Hb_000030_290 Hb_004724_270 Hb_004724_270 Hb_005245_080--Hb_004724_270 Hb_150651_040--Hb_005391_040 Hb_000529_030 Hb_000529_030 Hb_150651_040--Hb_000529_030 Hb_000457_180 Hb_000457_180 Hb_150651_040--Hb_000457_180 Hb_001279_080 Hb_001279_080 Hb_150651_040--Hb_001279_080 Hb_000465_390 Hb_000465_390 Hb_150651_040--Hb_000465_390 Hb_089995_010--Hb_005391_040 Hb_006907_130 Hb_006907_130 Hb_089995_010--Hb_006907_130 Hb_172426_040 Hb_172426_040 Hb_089995_010--Hb_172426_040 Hb_003918_010 Hb_003918_010 Hb_089995_010--Hb_003918_010 Hb_000015_040 Hb_000015_040 Hb_089995_010--Hb_000015_040 Hb_004734_040 Hb_004734_040 Hb_005391_040--Hb_004734_040 Hb_007894_060 Hb_007894_060 Hb_005391_040--Hb_007894_060 Hb_007928_030 Hb_007928_030 Hb_005391_040--Hb_007928_030 Hb_005391_040--Hb_000465_390 Hb_006059_050 Hb_006059_050 Hb_008013_050--Hb_006059_050 Hb_002301_150 Hb_002301_150 Hb_008013_050--Hb_002301_150 Hb_003502_060 Hb_003502_060 Hb_008013_050--Hb_003502_060 Hb_003151_040 Hb_003151_040 Hb_008013_050--Hb_003151_040 Hb_010098_050 Hb_010098_050 Hb_008013_050--Hb_010098_050 Hb_000030_030 Hb_000030_030 Hb_008013_050--Hb_000030_030 Hb_009711_020 Hb_009711_020 Hb_000030_290--Hb_009711_020 Hb_001616_040 Hb_001616_040 Hb_000030_290--Hb_001616_040 Hb_153544_010 Hb_153544_010 Hb_000030_290--Hb_153544_010 Hb_000334_210 Hb_000334_210 Hb_000030_290--Hb_000334_210 Hb_000331_470 Hb_000331_470 Hb_000030_290--Hb_000331_470 Hb_002609_210 Hb_002609_210 Hb_000030_290--Hb_002609_210 Hb_005211_180 Hb_005211_180 Hb_004724_270--Hb_005211_180 Hb_004724_270--Hb_008013_050 Hb_010368_010 Hb_010368_010 Hb_004724_270--Hb_010368_010 Hb_092462_020 Hb_092462_020 Hb_004724_270--Hb_092462_020 Hb_003124_150 Hb_003124_150 Hb_004724_270--Hb_003124_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2194 10.9335 26.6474 18.2164 11.4404 15.3533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.3947 36.6794 19.97 20.1567 14.8547

CAGE analysis