Hb_005211_180

Information

Type -
Description -
Location Contig5211: 160530-166173
Sequence    

Annotation

kegg
ID rcu:RCOM_0353750
description Transmembrane protein TPARL, putative
nr
ID XP_002529148.1
description Transmembrane protein TPARL, putative [Ricinus communis]
swissprot
ID Q9C6M1
description GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1
trembl
ID B9ST29
description Transmembrane protein TPARL, putative OS=Ricinus communis GN=RCOM_0353750 PE=4 SV=1
Gene Ontology
ID GO:0016021
description gdt1-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46769: 161836-162790 , PASA_asmbl_46770: 163523-164224 , PASA_asmbl_46771: 165794-166076
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005211_180 0.0 - - Transmembrane protein TPARL, putative [Ricinus communis]
2 Hb_004724_270 0.0801578163 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
3 Hb_092462_020 0.1124953679 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
4 Hb_000321_160 0.1191939776 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
5 Hb_000164_100 0.1208699323 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
6 Hb_012565_070 0.1217090422 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
7 Hb_003124_150 0.1225949664 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
8 Hb_000161_130 0.1266075678 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
9 Hb_076778_010 0.1266981394 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
10 Hb_000580_020 0.1290461009 - - unnamed protein product [Vitis vinifera]
11 Hb_011457_150 0.1320383963 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
12 Hb_000457_180 0.1326944187 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
13 Hb_000025_780 0.1347116851 - - PREDICTED: sanguinarine reductase [Jatropha curcas]
14 Hb_006153_110 0.1374342962 - - dimethylaniline monooxygenase, putative [Ricinus communis]
15 Hb_000367_160 0.1382627781 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
16 Hb_001318_260 0.1384208772 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
17 Hb_000796_160 0.1384717064 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
18 Hb_000310_020 0.1392225068 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
19 Hb_002027_350 0.139697076 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
20 Hb_001019_100 0.1404114787 - - BnaC02g13240D [Brassica napus]

Gene co-expression network

sample Hb_005211_180 Hb_005211_180 Hb_004724_270 Hb_004724_270 Hb_005211_180--Hb_004724_270 Hb_092462_020 Hb_092462_020 Hb_005211_180--Hb_092462_020 Hb_000321_160 Hb_000321_160 Hb_005211_180--Hb_000321_160 Hb_000164_100 Hb_000164_100 Hb_005211_180--Hb_000164_100 Hb_012565_070 Hb_012565_070 Hb_005211_180--Hb_012565_070 Hb_003124_150 Hb_003124_150 Hb_005211_180--Hb_003124_150 Hb_008013_050 Hb_008013_050 Hb_004724_270--Hb_008013_050 Hb_010368_010 Hb_010368_010 Hb_004724_270--Hb_010368_010 Hb_005245_080 Hb_005245_080 Hb_004724_270--Hb_005245_080 Hb_004724_270--Hb_092462_020 Hb_004724_270--Hb_003124_150 Hb_002184_110 Hb_002184_110 Hb_092462_020--Hb_002184_110 Hb_000729_030 Hb_000729_030 Hb_092462_020--Hb_000729_030 Hb_002043_030 Hb_002043_030 Hb_092462_020--Hb_002043_030 Hb_000010_190 Hb_000010_190 Hb_092462_020--Hb_000010_190 Hb_000161_130 Hb_000161_130 Hb_092462_020--Hb_000161_130 Hb_006153_110 Hb_006153_110 Hb_000321_160--Hb_006153_110 Hb_000236_390 Hb_000236_390 Hb_000321_160--Hb_000236_390 Hb_000193_110 Hb_000193_110 Hb_000321_160--Hb_000193_110 Hb_000529_030 Hb_000529_030 Hb_000321_160--Hb_000529_030 Hb_010106_010 Hb_010106_010 Hb_000321_160--Hb_010106_010 Hb_011512_070 Hb_011512_070 Hb_000321_160--Hb_011512_070 Hb_002027_350 Hb_002027_350 Hb_000164_100--Hb_002027_350 Hb_044653_040 Hb_044653_040 Hb_000164_100--Hb_044653_040 Hb_000176_020 Hb_000176_020 Hb_000164_100--Hb_000176_020 Hb_003669_020 Hb_003669_020 Hb_000164_100--Hb_003669_020 Hb_002534_100 Hb_002534_100 Hb_000164_100--Hb_002534_100 Hb_004712_210 Hb_004712_210 Hb_000164_100--Hb_004712_210 Hb_000300_260 Hb_000300_260 Hb_012565_070--Hb_000300_260 Hb_003848_040 Hb_003848_040 Hb_012565_070--Hb_003848_040 Hb_000457_180 Hb_000457_180 Hb_012565_070--Hb_000457_180 Hb_001863_380 Hb_001863_380 Hb_012565_070--Hb_001863_380 Hb_002307_180 Hb_002307_180 Hb_012565_070--Hb_002307_180 Hb_001105_170 Hb_001105_170 Hb_012565_070--Hb_001105_170 Hb_000310_020 Hb_000310_020 Hb_003124_150--Hb_000310_020 Hb_000928_070 Hb_000928_070 Hb_003124_150--Hb_000928_070 Hb_000505_130 Hb_000505_130 Hb_003124_150--Hb_000505_130 Hb_003124_150--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003124_150--Hb_000336_150 Hb_000580_020 Hb_000580_020 Hb_003124_150--Hb_000580_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.56874 9.34958 12.9525 6.08585 4.199 4.13637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5034 14.2644 5.99276 4.39969 8.81634

CAGE analysis