Hb_000321_160

Information

Type -
Description -
Location Contig321: 223120-241472
Sequence    

Annotation

kegg
ID rcu:RCOM_1314030
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_012086627.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
swissprot
ID Q93Y01
description Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1
trembl
ID A0A067JZ20
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_20376 PE=3 SV=1
Gene Ontology
ID GO:0004843
description ubiquitin-specific protease 9 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33956: 223660-236478 , PASA_asmbl_33957: 240670-241325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000321_160 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
2 Hb_006153_110 0.1074720926 - - dimethylaniline monooxygenase, putative [Ricinus communis]
3 Hb_000236_390 0.1077494237 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
4 Hb_000193_110 0.1100052651 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
5 Hb_000529_030 0.1103267112 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_010106_010 0.1125913299 - - PREDICTED: cucumisin-like [Populus euphratica]
7 Hb_011512_070 0.114584931 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
8 Hb_005211_180 0.1191939776 - - Transmembrane protein TPARL, putative [Ricinus communis]
9 Hb_002027_350 0.1207544928 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
10 Hb_000866_240 0.1209509345 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
11 Hb_000633_020 0.1220765229 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
12 Hb_012565_070 0.1227862316 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
13 Hb_000035_370 0.1235742166 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011618_060 0.1241464193 - - PREDICTED: DNA-repair protein XRCC1 [Jatropha curcas]
15 Hb_003669_020 0.1247340463 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
16 Hb_017987_050 0.1257128302 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
17 Hb_092462_020 0.1277071364 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
18 Hb_000010_110 0.1299095492 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
19 Hb_000729_030 0.1302862471 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
20 Hb_000622_180 0.1314674183 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000321_160 Hb_000321_160 Hb_006153_110 Hb_006153_110 Hb_000321_160--Hb_006153_110 Hb_000236_390 Hb_000236_390 Hb_000321_160--Hb_000236_390 Hb_000193_110 Hb_000193_110 Hb_000321_160--Hb_000193_110 Hb_000529_030 Hb_000529_030 Hb_000321_160--Hb_000529_030 Hb_010106_010 Hb_010106_010 Hb_000321_160--Hb_010106_010 Hb_011512_070 Hb_011512_070 Hb_000321_160--Hb_011512_070 Hb_000331_470 Hb_000331_470 Hb_006153_110--Hb_000331_470 Hb_000010_190 Hb_000010_190 Hb_006153_110--Hb_000010_190 Hb_000217_030 Hb_000217_030 Hb_006153_110--Hb_000217_030 Hb_010098_050 Hb_010098_050 Hb_006153_110--Hb_010098_050 Hb_007304_090 Hb_007304_090 Hb_006153_110--Hb_007304_090 Hb_006153_110--Hb_011512_070 Hb_000236_390--Hb_000529_030 Hb_001195_480 Hb_001195_480 Hb_000236_390--Hb_001195_480 Hb_000633_020 Hb_000633_020 Hb_000236_390--Hb_000633_020 Hb_004453_170 Hb_004453_170 Hb_000236_390--Hb_004453_170 Hb_000622_180 Hb_000622_180 Hb_000236_390--Hb_000622_180 Hb_001016_150 Hb_001016_150 Hb_000236_390--Hb_001016_150 Hb_000193_110--Hb_000622_180 Hb_000115_220 Hb_000115_220 Hb_000193_110--Hb_000115_220 Hb_000193_110--Hb_011512_070 Hb_000457_180 Hb_000457_180 Hb_000193_110--Hb_000457_180 Hb_012565_070 Hb_012565_070 Hb_000193_110--Hb_012565_070 Hb_021068_040 Hb_021068_040 Hb_000193_110--Hb_021068_040 Hb_000529_030--Hb_001195_480 Hb_000529_030--Hb_011512_070 Hb_150651_040 Hb_150651_040 Hb_000529_030--Hb_150651_040 Hb_002226_060 Hb_002226_060 Hb_000529_030--Hb_002226_060 Hb_000656_240 Hb_000656_240 Hb_000529_030--Hb_000656_240 Hb_003607_050 Hb_003607_050 Hb_010106_010--Hb_003607_050 Hb_003125_190 Hb_003125_190 Hb_010106_010--Hb_003125_190 Hb_010106_010--Hb_000633_020 Hb_010106_010--Hb_000529_030 Hb_010222_020 Hb_010222_020 Hb_010106_010--Hb_010222_020 Hb_002768_030 Hb_002768_030 Hb_010106_010--Hb_002768_030 Hb_011512_070--Hb_000656_240 Hb_011512_070--Hb_002226_060 Hb_011512_070--Hb_010098_050 Hb_011512_070--Hb_007304_090 Hb_000205_090 Hb_000205_090 Hb_011512_070--Hb_000205_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.83619 5.71867 6.72621 2.95419 3.22102 2.3672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.39945 12.4207 2.97454 2.63404 4.62635

CAGE analysis