Hb_001817_160

Information

Type -
Description -
Location Contig1817: 138832-147366
Sequence    

Annotation

kegg
ID rcu:RCOM_0993480
description hypothetical protein
nr
ID XP_002521024.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q16AN8
description 30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsP PE=3 SV=1
trembl
ID B9S4L8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0993480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17671: 139156-143502 , PASA_asmbl_17672: 143782-147496
cDNA
(Sanger)
(ID:Location)		 004_I18.ab1: 143812-147149 , 023_E07.ab1: 139156-139946 , 025_O15.ab1: 143782-147180

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010997_080 0.0970083758 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
3 Hb_000976_310 0.1010755761 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
4 Hb_001894_050 0.1035731952 - - PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
5 Hb_000189_560 0.1124017082 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
6 Hb_005306_190 0.1160709474 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
7 Hb_001856_230 0.1172582199 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
8 Hb_005551_050 0.1175017896 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
9 Hb_001437_080 0.1193877028 transcription factor TF Family: TCP hypothetical protein JCGZ_05472 [Jatropha curcas]
10 Hb_005116_060 0.1198133254 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
11 Hb_003498_090 0.1199459579 - - hypothetical protein RCOM_0867850 [Ricinus communis]
12 Hb_001864_060 0.1217538345 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
13 Hb_032278_030 0.1221676926 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_003389_040 0.1223591798 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
15 Hb_001564_080 0.1227503298 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
16 Hb_189208_020 0.1228490031 - - LRX2, putative [Ricinus communis]
17 Hb_002272_080 0.1239024282 - - -
18 Hb_000696_150 0.1240302729 - - PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Jatropha curcas]
19 Hb_000120_330 0.1245637534 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004032_270 0.124581427 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_001817_160 Hb_001817_160 Hb_010997_080 Hb_010997_080 Hb_001817_160--Hb_010997_080 Hb_000976_310 Hb_000976_310 Hb_001817_160--Hb_000976_310 Hb_001894_050 Hb_001894_050 Hb_001817_160--Hb_001894_050 Hb_000189_560 Hb_000189_560 Hb_001817_160--Hb_000189_560 Hb_005306_190 Hb_005306_190 Hb_001817_160--Hb_005306_190 Hb_001856_230 Hb_001856_230 Hb_001817_160--Hb_001856_230 Hb_002205_110 Hb_002205_110 Hb_010997_080--Hb_002205_110 Hb_000441_140 Hb_000441_140 Hb_010997_080--Hb_000441_140 Hb_000028_370 Hb_000028_370 Hb_010997_080--Hb_000028_370 Hb_000173_490 Hb_000173_490 Hb_010997_080--Hb_000173_490 Hb_003389_040 Hb_003389_040 Hb_010997_080--Hb_003389_040 Hb_005048_130 Hb_005048_130 Hb_010997_080--Hb_005048_130 Hb_001838_060 Hb_001838_060 Hb_000976_310--Hb_001838_060 Hb_001329_160 Hb_001329_160 Hb_000976_310--Hb_001329_160 Hb_001157_040 Hb_001157_040 Hb_000976_310--Hb_001157_040 Hb_008959_020 Hb_008959_020 Hb_000976_310--Hb_008959_020 Hb_001546_080 Hb_001546_080 Hb_000976_310--Hb_001546_080 Hb_000976_310--Hb_000189_560 Hb_001564_080 Hb_001564_080 Hb_001894_050--Hb_001564_080 Hb_189208_020 Hb_189208_020 Hb_001894_050--Hb_189208_020 Hb_000451_070 Hb_000451_070 Hb_001894_050--Hb_000451_070 Hb_000915_160 Hb_000915_160 Hb_001894_050--Hb_000915_160 Hb_002042_130 Hb_002042_130 Hb_001894_050--Hb_002042_130 Hb_000866_220 Hb_000866_220 Hb_000189_560--Hb_000866_220 Hb_007532_030 Hb_007532_030 Hb_000189_560--Hb_007532_030 Hb_000185_030 Hb_000185_030 Hb_000189_560--Hb_000185_030 Hb_007508_090 Hb_007508_090 Hb_000189_560--Hb_007508_090 Hb_000710_060 Hb_000710_060 Hb_000189_560--Hb_000710_060 Hb_004355_020 Hb_004355_020 Hb_000189_560--Hb_004355_020 Hb_000357_110 Hb_000357_110 Hb_005306_190--Hb_000357_110 Hb_095296_010 Hb_095296_010 Hb_005306_190--Hb_095296_010 Hb_005116_060 Hb_005116_060 Hb_005306_190--Hb_005116_060 Hb_007943_050 Hb_007943_050 Hb_005306_190--Hb_007943_050 Hb_000178_130 Hb_000178_130 Hb_005306_190--Hb_000178_130 Hb_000179_070 Hb_000179_070 Hb_005306_190--Hb_000179_070 Hb_012564_030 Hb_012564_030 Hb_001856_230--Hb_012564_030 Hb_048219_010 Hb_048219_010 Hb_001856_230--Hb_048219_010 Hb_003544_110 Hb_003544_110 Hb_001856_230--Hb_003544_110 Hb_001856_230--Hb_007532_030 Hb_000331_670 Hb_000331_670 Hb_001856_230--Hb_000331_670 Hb_002374_310 Hb_002374_310 Hb_001856_230--Hb_002374_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.251 44.4026 11.3222 17.383 13.2686 29.5144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.9186 38.4925 20.2499 15.2392 11.9459

CAGE analysis