Hb_000915_160

Information

Type -
Description -
Location Contig915: 127168-127898
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11860g
description HISTONE H1-3 family protein
nr
ID XP_012065526.1
description PREDICTED: histone H1 [Jatropha curcas]
swissprot
ID P40267
description Histone H1 OS=Solanum pennellii PE=2 SV=1
trembl
ID A0A067LEC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06500 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62225: 127104-128258
cDNA
(Sanger)
(ID:Location)		 008_B01.ab1: 127104-127984 , 046_C02.ab1: 127106-127967

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000915_160 0.0 - - PREDICTED: histone H1 [Jatropha curcas]
2 Hb_003185_080 0.1015030523 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
3 Hb_002486_040 0.1022480504 - - -
4 Hb_000002_340 0.1057584645 - - PREDICTED: peroxisomal bifunctional enzyme-like [Jatropha curcas]
5 Hb_001195_330 0.1151155222 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000221_210 0.1181456355 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
7 Hb_003050_220 0.1191878496 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
8 Hb_001894_050 0.1212157082 - - PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
9 Hb_006198_110 0.1218088419 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
10 Hb_029879_110 0.1251453481 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
11 Hb_000220_220 0.1254200976 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
12 Hb_000696_340 0.1259540122 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
13 Hb_000958_110 0.1268234849 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
14 Hb_002107_030 0.1281246831 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
15 Hb_003494_200 0.1285744693 - - PREDICTED: beta-1,3-galactosyltransferase 15-like [Jatropha curcas]
16 Hb_004117_010 0.1324109267 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
17 Hb_000500_100 0.1324618421 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
18 Hb_006153_110 0.1331119364 - - dimethylaniline monooxygenase, putative [Ricinus communis]
19 Hb_000853_420 0.1343342165 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_000010_190 0.1359256616 - - PREDICTED: protein-L-isoaspartate O-methyltransferase 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000915_160 Hb_000915_160 Hb_003185_080 Hb_003185_080 Hb_000915_160--Hb_003185_080 Hb_002486_040 Hb_002486_040 Hb_000915_160--Hb_002486_040 Hb_000002_340 Hb_000002_340 Hb_000915_160--Hb_000002_340 Hb_001195_330 Hb_001195_330 Hb_000915_160--Hb_001195_330 Hb_000221_210 Hb_000221_210 Hb_000915_160--Hb_000221_210 Hb_003050_220 Hb_003050_220 Hb_000915_160--Hb_003050_220 Hb_006198_110 Hb_006198_110 Hb_003185_080--Hb_006198_110 Hb_000656_400 Hb_000656_400 Hb_003185_080--Hb_000656_400 Hb_003749_010 Hb_003749_010 Hb_003185_080--Hb_003749_010 Hb_004117_010 Hb_004117_010 Hb_003185_080--Hb_004117_010 Hb_001235_190 Hb_001235_190 Hb_003185_080--Hb_001235_190 Hb_028995_040 Hb_028995_040 Hb_003185_080--Hb_028995_040 Hb_003126_080 Hb_003126_080 Hb_002486_040--Hb_003126_080 Hb_007590_050 Hb_007590_050 Hb_002486_040--Hb_007590_050 Hb_002685_170 Hb_002685_170 Hb_002486_040--Hb_002685_170 Hb_004491_010 Hb_004491_010 Hb_002486_040--Hb_004491_010 Hb_002486_040--Hb_003185_080 Hb_000537_080 Hb_000537_080 Hb_002486_040--Hb_000537_080 Hb_000930_030 Hb_000930_030 Hb_000002_340--Hb_000930_030 Hb_000732_010 Hb_000732_010 Hb_000002_340--Hb_000732_010 Hb_000958_110 Hb_000958_110 Hb_000002_340--Hb_000958_110 Hb_002107_030 Hb_002107_030 Hb_000002_340--Hb_002107_030 Hb_003057_100 Hb_003057_100 Hb_000002_340--Hb_003057_100 Hb_001396_200 Hb_001396_200 Hb_000002_340--Hb_001396_200 Hb_001195_330--Hb_006198_110 Hb_004751_020 Hb_004751_020 Hb_001195_330--Hb_004751_020 Hb_029879_110 Hb_029879_110 Hb_001195_330--Hb_029879_110 Hb_001766_110 Hb_001766_110 Hb_001195_330--Hb_001766_110 Hb_001195_330--Hb_003185_080 Hb_000696_340 Hb_000696_340 Hb_000221_210--Hb_000696_340 Hb_000086_060 Hb_000086_060 Hb_000221_210--Hb_000086_060 Hb_000445_180 Hb_000445_180 Hb_000221_210--Hb_000445_180 Hb_002137_020 Hb_002137_020 Hb_000221_210--Hb_002137_020 Hb_005941_040 Hb_005941_040 Hb_000221_210--Hb_005941_040 Hb_000221_210--Hb_003057_100 Hb_001579_220 Hb_001579_220 Hb_003050_220--Hb_001579_220 Hb_001902_140 Hb_001902_140 Hb_003050_220--Hb_001902_140 Hb_000015_040 Hb_000015_040 Hb_003050_220--Hb_000015_040 Hb_032202_190 Hb_032202_190 Hb_003050_220--Hb_032202_190 Hb_003050_220--Hb_002107_030 Hb_003050_220--Hb_000958_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
988.671 1174.65 411.944 309.081 706.258 610.396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1888.26 1383.67 635.517 774.648 732.291

CAGE analysis