Hb_001195_330

Information

Type -
Description -
Location Contig1195: 193475-193891
Sequence    

Annotation

kegg
ID rcu:RCOM_1594200
description hypothetical protein
nr
ID XP_002510381.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7T8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1594200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 047_E23.ab1: 193508-194287

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_330 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006198_110 0.0993881682 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
3 Hb_000915_160 0.1151155222 - - PREDICTED: histone H1 [Jatropha curcas]
4 Hb_004751_020 0.1166246614 - - PREDICTED: uncharacterized protein LOC105648266 [Jatropha curcas]
5 Hb_029879_110 0.1313852794 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
6 Hb_001766_110 0.1391405168 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
7 Hb_003185_080 0.1397130504 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
8 Hb_001481_090 0.1397136196 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
9 Hb_002486_040 0.1404406568 - - -
10 Hb_006913_030 0.1414265996 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
11 Hb_002107_030 0.1425527441 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
12 Hb_019253_020 0.143510393 - - PREDICTED: uncharacterized protein LOC105647727 [Jatropha curcas]
13 Hb_004117_010 0.1439789499 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
14 Hb_164804_010 0.1443000822 - - JHL23J11.8 [Jatropha curcas]
15 Hb_000866_270 0.1473071122 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
16 Hb_002141_030 0.1475522683 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005064_060 0.1480396479 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_004920_040 0.1481917111 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
19 Hb_000853_420 0.1483293729 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_002942_190 0.1489798633 - - poly(A) polymerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001195_330 Hb_001195_330 Hb_006198_110 Hb_006198_110 Hb_001195_330--Hb_006198_110 Hb_000915_160 Hb_000915_160 Hb_001195_330--Hb_000915_160 Hb_004751_020 Hb_004751_020 Hb_001195_330--Hb_004751_020 Hb_029879_110 Hb_029879_110 Hb_001195_330--Hb_029879_110 Hb_001766_110 Hb_001766_110 Hb_001195_330--Hb_001766_110 Hb_003185_080 Hb_003185_080 Hb_001195_330--Hb_003185_080 Hb_006198_110--Hb_004751_020 Hb_000853_420 Hb_000853_420 Hb_006198_110--Hb_000853_420 Hb_001259_090 Hb_001259_090 Hb_006198_110--Hb_001259_090 Hb_004657_050 Hb_004657_050 Hb_006198_110--Hb_004657_050 Hb_006198_110--Hb_003185_080 Hb_000866_270 Hb_000866_270 Hb_006198_110--Hb_000866_270 Hb_000915_160--Hb_003185_080 Hb_002486_040 Hb_002486_040 Hb_000915_160--Hb_002486_040 Hb_000002_340 Hb_000002_340 Hb_000915_160--Hb_000002_340 Hb_000221_210 Hb_000221_210 Hb_000915_160--Hb_000221_210 Hb_003050_220 Hb_003050_220 Hb_000915_160--Hb_003050_220 Hb_004751_020--Hb_000866_270 Hb_010661_030 Hb_010661_030 Hb_004751_020--Hb_010661_030 Hb_004751_020--Hb_004657_050 Hb_002232_440 Hb_002232_440 Hb_004751_020--Hb_002232_440 Hb_002928_130 Hb_002928_130 Hb_004751_020--Hb_002928_130 Hb_000220_220 Hb_000220_220 Hb_029879_110--Hb_000220_220 Hb_000116_440 Hb_000116_440 Hb_029879_110--Hb_000116_440 Hb_004310_030 Hb_004310_030 Hb_029879_110--Hb_004310_030 Hb_000062_550 Hb_000062_550 Hb_029879_110--Hb_000062_550 Hb_005064_060 Hb_005064_060 Hb_029879_110--Hb_005064_060 Hb_011883_010 Hb_011883_010 Hb_029879_110--Hb_011883_010 Hb_001481_090 Hb_001481_090 Hb_001766_110--Hb_001481_090 Hb_000656_400 Hb_000656_400 Hb_001766_110--Hb_000656_400 Hb_003126_080 Hb_003126_080 Hb_001766_110--Hb_003126_080 Hb_000251_130 Hb_000251_130 Hb_001766_110--Hb_000251_130 Hb_003952_090 Hb_003952_090 Hb_001766_110--Hb_003952_090 Hb_000085_050 Hb_000085_050 Hb_001766_110--Hb_000085_050 Hb_003185_080--Hb_000656_400 Hb_003749_010 Hb_003749_010 Hb_003185_080--Hb_003749_010 Hb_004117_010 Hb_004117_010 Hb_003185_080--Hb_004117_010 Hb_001235_190 Hb_001235_190 Hb_003185_080--Hb_001235_190 Hb_028995_040 Hb_028995_040 Hb_003185_080--Hb_028995_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.4086 30.9338 10.9059 7.66195 24.6777 20.3271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.3678 51.0743 18.289 30.5198 20.1061

CAGE analysis