Hb_011883_010

Information

Type -
Description -
Location Contig11883: 20063-21739
Sequence    

Annotation

kegg
ID rcu:RCOM_1043100
description spliceosome associated protein, putative
nr
ID XP_012074191.1
description PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
swissprot
ID Q15427
description Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
trembl
ID A0A067KMQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09813 PE=4 SV=1
Gene Ontology
ID GO:0000166
description splicing factor 3b subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05576: 20066-21684
cDNA
(Sanger)
(ID:Location)		 011_N18.ab1: 20101-21262 , 023_H09.ab1: 20356-21665 , 047_J05.ab1: 20272-21665

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011883_010 0.0 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
2 Hb_017224_030 0.0384329557 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
3 Hb_005291_030 0.0741258685 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
4 Hb_000571_120 0.0782224155 - - importin beta-1, putative [Ricinus communis]
5 Hb_003057_100 0.0782436136 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
6 Hb_011671_430 0.0814141983 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
7 Hb_000953_020 0.0814681016 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
8 Hb_002685_110 0.0828609533 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
9 Hb_006922_100 0.0829668213 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
10 Hb_004355_020 0.083396779 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
11 Hb_000030_190 0.0843337622 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
12 Hb_000035_320 0.0845040561 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
13 Hb_003761_010 0.0864407476 - - alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_001489_150 0.0865917047 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
15 Hb_000031_060 0.0871607246 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
16 Hb_000059_330 0.0876099127 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
17 Hb_007441_200 0.087899455 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
18 Hb_007416_280 0.0892337403 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000510_130 0.0901688005 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
20 Hb_000768_040 0.0902568916 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_011883_010 Hb_011883_010 Hb_017224_030 Hb_017224_030 Hb_011883_010--Hb_017224_030 Hb_005291_030 Hb_005291_030 Hb_011883_010--Hb_005291_030 Hb_000571_120 Hb_000571_120 Hb_011883_010--Hb_000571_120 Hb_003057_100 Hb_003057_100 Hb_011883_010--Hb_003057_100 Hb_011671_430 Hb_011671_430 Hb_011883_010--Hb_011671_430 Hb_000953_020 Hb_000953_020 Hb_011883_010--Hb_000953_020 Hb_000035_320 Hb_000035_320 Hb_017224_030--Hb_000035_320 Hb_002685_110 Hb_002685_110 Hb_017224_030--Hb_002685_110 Hb_017224_030--Hb_005291_030 Hb_003092_040 Hb_003092_040 Hb_017224_030--Hb_003092_040 Hb_000059_330 Hb_000059_330 Hb_017224_030--Hb_000059_330 Hb_000030_190 Hb_000030_190 Hb_005291_030--Hb_000030_190 Hb_001638_170 Hb_001638_170 Hb_005291_030--Hb_001638_170 Hb_001489_150 Hb_001489_150 Hb_005291_030--Hb_001489_150 Hb_002271_020 Hb_002271_020 Hb_005291_030--Hb_002271_020 Hb_002303_070 Hb_002303_070 Hb_005291_030--Hb_002303_070 Hb_002473_130 Hb_002473_130 Hb_005291_030--Hb_002473_130 Hb_002026_180 Hb_002026_180 Hb_000571_120--Hb_002026_180 Hb_002137_020 Hb_002137_020 Hb_000571_120--Hb_002137_020 Hb_007441_200 Hb_007441_200 Hb_000571_120--Hb_007441_200 Hb_000571_120--Hb_000953_020 Hb_000768_040 Hb_000768_040 Hb_000571_120--Hb_000768_040 Hb_000805_020 Hb_000805_020 Hb_000571_120--Hb_000805_020 Hb_000032_270 Hb_000032_270 Hb_003057_100--Hb_000032_270 Hb_032202_190 Hb_032202_190 Hb_003057_100--Hb_032202_190 Hb_029866_090 Hb_029866_090 Hb_003057_100--Hb_029866_090 Hb_005305_080 Hb_005305_080 Hb_003057_100--Hb_005305_080 Hb_000510_130 Hb_000510_130 Hb_003057_100--Hb_000510_130 Hb_003057_100--Hb_000059_330 Hb_000038_170 Hb_000038_170 Hb_011671_430--Hb_000038_170 Hb_004577_020 Hb_004577_020 Hb_011671_430--Hb_004577_020 Hb_014497_050 Hb_014497_050 Hb_011671_430--Hb_014497_050 Hb_003058_190 Hb_003058_190 Hb_011671_430--Hb_003058_190 Hb_004355_020 Hb_004355_020 Hb_011671_430--Hb_004355_020 Hb_003158_010 Hb_003158_010 Hb_011671_430--Hb_003158_010 Hb_007416_280 Hb_007416_280 Hb_000953_020--Hb_007416_280 Hb_000953_020--Hb_000510_130 Hb_000953_020--Hb_002026_180 Hb_004032_150 Hb_004032_150 Hb_000953_020--Hb_004032_150 Hb_020956_020 Hb_020956_020 Hb_000953_020--Hb_020956_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.1315 44.0729 22.9135 31.6707 30.6867 58.1637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.7496 46.046 43.3813 31.0139 28.5675

CAGE analysis