Hb_003544_110

Information

Type -
Description -
Location Contig3544: 67097-69930
Sequence    

Annotation

kegg
ID pvu:PHAVU_006G034500g
description hypothetical protein
nr
ID XP_012066533.1
description PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
swissprot
ID Q6AVI0
description Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica GN=Os03g0733400 PE=2 SV=1
trembl
ID A0A067L2L1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00166 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc finger bed domain-containing protein ricesleeper 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36757: 65818-66423 , PASA_asmbl_36759: 67498-70716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003544_110 0.0 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
2 Hb_001366_310 0.0692413196 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
3 Hb_012564_030 0.0719139243 - - coronatine-insensitive 1 [Hevea brasiliensis]
4 Hb_002818_030 0.0729729022 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
5 Hb_003494_020 0.0756920982 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
6 Hb_004916_010 0.076224333 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
7 Hb_048219_010 0.0765533649 - - coronatine-insensitive 1 [Hevea brasiliensis]
8 Hb_002234_170 0.0824574863 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
9 Hb_000072_120 0.0841450056 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_001799_180 0.0856532444 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
11 Hb_000331_670 0.0860481221 - - PREDICTED: protein tipD [Jatropha curcas]
12 Hb_000049_260 0.0862158599 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_000603_280 0.0880975952 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
14 Hb_001674_030 0.0887116409 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
15 Hb_015807_150 0.0894705047 - - actin binding protein, putative [Ricinus communis]
16 Hb_015934_040 0.0895769839 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
17 Hb_007850_090 0.0897588575 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
18 Hb_012490_080 0.0902305965 - - threonine synthase, putative [Ricinus communis]
19 Hb_000406_140 0.0922315566 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001856_230 0.0930681591 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]

Gene co-expression network

sample Hb_003544_110 Hb_003544_110 Hb_001366_310 Hb_001366_310 Hb_003544_110--Hb_001366_310 Hb_012564_030 Hb_012564_030 Hb_003544_110--Hb_012564_030 Hb_002818_030 Hb_002818_030 Hb_003544_110--Hb_002818_030 Hb_003494_020 Hb_003494_020 Hb_003544_110--Hb_003494_020 Hb_004916_010 Hb_004916_010 Hb_003544_110--Hb_004916_010 Hb_048219_010 Hb_048219_010 Hb_003544_110--Hb_048219_010 Hb_143766_060 Hb_143766_060 Hb_001366_310--Hb_143766_060 Hb_012490_090 Hb_012490_090 Hb_001366_310--Hb_012490_090 Hb_000976_210 Hb_000976_210 Hb_001366_310--Hb_000976_210 Hb_001366_310--Hb_003494_020 Hb_000392_150 Hb_000392_150 Hb_001366_310--Hb_000392_150 Hb_012564_030--Hb_048219_010 Hb_001856_230 Hb_001856_230 Hb_012564_030--Hb_001856_230 Hb_005016_160 Hb_005016_160 Hb_012564_030--Hb_005016_160 Hb_000331_670 Hb_000331_670 Hb_012564_030--Hb_000331_670 Hb_012055_060 Hb_012055_060 Hb_012564_030--Hb_012055_060 Hb_002818_030--Hb_004916_010 Hb_019863_070 Hb_019863_070 Hb_002818_030--Hb_019863_070 Hb_003849_110 Hb_003849_110 Hb_002818_030--Hb_003849_110 Hb_000049_260 Hb_000049_260 Hb_002818_030--Hb_000049_260 Hb_002798_070 Hb_002798_070 Hb_002818_030--Hb_002798_070 Hb_000069_310 Hb_000069_310 Hb_002818_030--Hb_000069_310 Hb_000174_270 Hb_000174_270 Hb_003494_020--Hb_000174_270 Hb_002234_170 Hb_002234_170 Hb_003494_020--Hb_002234_170 Hb_000028_130 Hb_000028_130 Hb_003494_020--Hb_000028_130 Hb_000258_160 Hb_000258_160 Hb_003494_020--Hb_000258_160 Hb_062226_070 Hb_062226_070 Hb_003494_020--Hb_062226_070 Hb_003494_020--Hb_002818_030 Hb_004916_010--Hb_003849_110 Hb_000029_060 Hb_000029_060 Hb_004916_010--Hb_000029_060 Hb_002234_090 Hb_002234_090 Hb_004916_010--Hb_002234_090 Hb_000015_170 Hb_000015_170 Hb_004916_010--Hb_000015_170 Hb_001716_020 Hb_001716_020 Hb_004916_010--Hb_001716_020 Hb_004767_050 Hb_004767_050 Hb_048219_010--Hb_004767_050 Hb_001818_070 Hb_001818_070 Hb_048219_010--Hb_001818_070 Hb_048219_010--Hb_001856_230 Hb_011491_010 Hb_011491_010 Hb_048219_010--Hb_011491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.16151 15.0806 5.92977 10.562 6.41831 10.2822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.43925 8.82113 13.6875 6.9426 8.02633

CAGE analysis