Hb_001856_230

Information

Type -
Description -
Location Contig1856: 277805-278947
Sequence    

Annotation

kegg
ID rcu:RCOM_1027050
description tbp-associated factor taf, putative
nr
ID XP_012084836.1
description PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
swissprot
ID Q9SYZ9
description Transcription initiation factor TFIID subunit 8 OS=Arabidopsis thaliana GN=TAF8 PE=1 SV=1
trembl
ID A0A067K645
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19958 PE=4 SV=1
Gene Ontology
ID GO:0046982
description transcription initiation factor tfiid subunit 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18181: 277524-279711 , PASA_asmbl_18182: 276535-279711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_230 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
2 Hb_012564_030 0.0600200008 - - coronatine-insensitive 1 [Hevea brasiliensis]
3 Hb_048219_010 0.0720646093 - - coronatine-insensitive 1 [Hevea brasiliensis]
4 Hb_003544_110 0.0930681591 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
5 Hb_007532_030 0.0946984603 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
6 Hb_000331_670 0.0955293066 - - PREDICTED: protein tipD [Jatropha curcas]
7 Hb_002374_310 0.097694109 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
8 Hb_000181_070 0.1013376289 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_004767_050 0.1026450118 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
10 Hb_001828_130 0.1037958764 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
11 Hb_000213_100 0.1038353483 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
12 Hb_001818_070 0.1066610891 - - carbon catabolite repressor protein, putative [Ricinus communis]
13 Hb_001864_060 0.1070378685 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
14 Hb_000866_220 0.1072879763 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
15 Hb_000049_260 0.1074936388 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_007508_090 0.1077215624 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
17 Hb_003371_090 0.1079465032 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
18 Hb_005015_070 0.1081059688 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
19 Hb_140506_010 0.109059914 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
20 Hb_011491_010 0.1093702356 - - Protein YME1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001856_230 Hb_001856_230 Hb_012564_030 Hb_012564_030 Hb_001856_230--Hb_012564_030 Hb_048219_010 Hb_048219_010 Hb_001856_230--Hb_048219_010 Hb_003544_110 Hb_003544_110 Hb_001856_230--Hb_003544_110 Hb_007532_030 Hb_007532_030 Hb_001856_230--Hb_007532_030 Hb_000331_670 Hb_000331_670 Hb_001856_230--Hb_000331_670 Hb_002374_310 Hb_002374_310 Hb_001856_230--Hb_002374_310 Hb_012564_030--Hb_048219_010 Hb_005016_160 Hb_005016_160 Hb_012564_030--Hb_005016_160 Hb_012564_030--Hb_003544_110 Hb_012564_030--Hb_000331_670 Hb_012055_060 Hb_012055_060 Hb_012564_030--Hb_012055_060 Hb_004767_050 Hb_004767_050 Hb_048219_010--Hb_004767_050 Hb_001818_070 Hb_001818_070 Hb_048219_010--Hb_001818_070 Hb_048219_010--Hb_003544_110 Hb_011491_010 Hb_011491_010 Hb_048219_010--Hb_011491_010 Hb_001366_310 Hb_001366_310 Hb_003544_110--Hb_001366_310 Hb_002818_030 Hb_002818_030 Hb_003544_110--Hb_002818_030 Hb_003494_020 Hb_003494_020 Hb_003544_110--Hb_003494_020 Hb_004916_010 Hb_004916_010 Hb_003544_110--Hb_004916_010 Hb_009178_030 Hb_009178_030 Hb_007532_030--Hb_009178_030 Hb_002218_010 Hb_002218_010 Hb_007532_030--Hb_002218_010 Hb_004907_110 Hb_004907_110 Hb_007532_030--Hb_004907_110 Hb_008725_260 Hb_008725_260 Hb_007532_030--Hb_008725_260 Hb_007508_090 Hb_007508_090 Hb_007532_030--Hb_007508_090 Hb_000189_560 Hb_000189_560 Hb_007532_030--Hb_000189_560 Hb_015934_040 Hb_015934_040 Hb_000331_670--Hb_015934_040 Hb_003211_020 Hb_003211_020 Hb_000331_670--Hb_003211_020 Hb_001157_040 Hb_001157_040 Hb_000331_670--Hb_001157_040 Hb_007163_120 Hb_007163_120 Hb_000331_670--Hb_007163_120 Hb_013399_100 Hb_013399_100 Hb_000331_670--Hb_013399_100 Hb_021576_110 Hb_021576_110 Hb_000331_670--Hb_021576_110 Hb_001141_390 Hb_001141_390 Hb_002374_310--Hb_001141_390 Hb_001621_150 Hb_001621_150 Hb_002374_310--Hb_001621_150 Hb_000181_070 Hb_000181_070 Hb_002374_310--Hb_000181_070 Hb_005015_070 Hb_005015_070 Hb_002374_310--Hb_005015_070 Hb_002374_310--Hb_007532_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9008 30.5343 6.9962 14.721 10.1238 18.4888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9369 19.4891 23.4799 8.01792 10.4042

CAGE analysis