Hb_001366_310

Information

Type -
Description -
Location Contig1366: 268251-273984
Sequence    

Annotation

kegg
ID rcu:RCOM_1342130
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012083043.1
description PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
swissprot
ID Q8RWN7
description Protein phosphatase 2C 32 OS=Arabidopsis thaliana GN=POL PE=1 SV=2
trembl
ID A0A067K7X1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14136 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein phosphatase 2c 32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10101: 268256-273867 , PASA_asmbl_10102: 273876-274046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_310 0.0 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
2 Hb_003544_110 0.0692413196 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
3 Hb_143766_060 0.0803601401 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
4 Hb_012490_090 0.0883856767 - - PREDICTED: myosin-17 [Jatropha curcas]
5 Hb_000976_210 0.0887541981 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
6 Hb_003494_020 0.0910346433 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
7 Hb_000392_150 0.0942216261 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 [Jatropha curcas]
8 Hb_012490_080 0.0950824319 - - threonine synthase, putative [Ricinus communis]
9 Hb_000866_120 0.095737694 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
10 Hb_013358_010 0.0960565218 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
11 Hb_002234_170 0.0964198147 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
12 Hb_000172_110 0.0966863594 - - -
13 Hb_000317_370 0.0968125759 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
14 Hb_001217_050 0.0979285313 - - actin binding protein, putative [Ricinus communis]
15 Hb_000140_230 0.0994069578 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
16 Hb_048219_010 0.0994372151 - - coronatine-insensitive 1 [Hevea brasiliensis]
17 Hb_003082_010 0.1011029866 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]
18 Hb_000009_600 0.1012893095 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
19 Hb_012564_030 0.1020234324 - - coronatine-insensitive 1 [Hevea brasiliensis]
20 Hb_024621_040 0.1025517881 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]

Gene co-expression network

sample Hb_001366_310 Hb_001366_310 Hb_003544_110 Hb_003544_110 Hb_001366_310--Hb_003544_110 Hb_143766_060 Hb_143766_060 Hb_001366_310--Hb_143766_060 Hb_012490_090 Hb_012490_090 Hb_001366_310--Hb_012490_090 Hb_000976_210 Hb_000976_210 Hb_001366_310--Hb_000976_210 Hb_003494_020 Hb_003494_020 Hb_001366_310--Hb_003494_020 Hb_000392_150 Hb_000392_150 Hb_001366_310--Hb_000392_150 Hb_012564_030 Hb_012564_030 Hb_003544_110--Hb_012564_030 Hb_002818_030 Hb_002818_030 Hb_003544_110--Hb_002818_030 Hb_003544_110--Hb_003494_020 Hb_004916_010 Hb_004916_010 Hb_003544_110--Hb_004916_010 Hb_048219_010 Hb_048219_010 Hb_003544_110--Hb_048219_010 Hb_031042_050 Hb_031042_050 Hb_143766_060--Hb_031042_050 Hb_013358_010 Hb_013358_010 Hb_143766_060--Hb_013358_010 Hb_001322_130 Hb_001322_130 Hb_143766_060--Hb_001322_130 Hb_001279_120 Hb_001279_120 Hb_143766_060--Hb_001279_120 Hb_000479_070 Hb_000479_070 Hb_143766_060--Hb_000479_070 Hb_000215_140 Hb_000215_140 Hb_012490_090--Hb_000215_140 Hb_000313_120 Hb_000313_120 Hb_012490_090--Hb_000313_120 Hb_146224_010 Hb_146224_010 Hb_012490_090--Hb_146224_010 Hb_002260_050 Hb_002260_050 Hb_012490_090--Hb_002260_050 Hb_001217_050 Hb_001217_050 Hb_012490_090--Hb_001217_050 Hb_012490_090--Hb_013358_010 Hb_002043_140 Hb_002043_140 Hb_000976_210--Hb_002043_140 Hb_003082_010 Hb_003082_010 Hb_000976_210--Hb_003082_010 Hb_002006_040 Hb_002006_040 Hb_000976_210--Hb_002006_040 Hb_002217_170 Hb_002217_170 Hb_000976_210--Hb_002217_170 Hb_000317_370 Hb_000317_370 Hb_000976_210--Hb_000317_370 Hb_002890_090 Hb_002890_090 Hb_000976_210--Hb_002890_090 Hb_000174_270 Hb_000174_270 Hb_003494_020--Hb_000174_270 Hb_002234_170 Hb_002234_170 Hb_003494_020--Hb_002234_170 Hb_000028_130 Hb_000028_130 Hb_003494_020--Hb_000028_130 Hb_000258_160 Hb_000258_160 Hb_003494_020--Hb_000258_160 Hb_062226_070 Hb_062226_070 Hb_003494_020--Hb_062226_070 Hb_003494_020--Hb_002818_030 Hb_000866_120 Hb_000866_120 Hb_000392_150--Hb_000866_120 Hb_000392_150--Hb_000976_210 Hb_002798_070 Hb_002798_070 Hb_000392_150--Hb_002798_070 Hb_002007_160 Hb_002007_160 Hb_000392_150--Hb_002007_160 Hb_000330_040 Hb_000330_040 Hb_000392_150--Hb_000330_040 Hb_029142_050 Hb_029142_050 Hb_000392_150--Hb_029142_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.92632 11.6636 4.21584 8.25791 6.88502 6.157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.28362 5.63091 12.5914 6.10977 6.49761

CAGE analysis