Hb_002006_040

Information

Type -
Description -
Location Contig2006: 19690-29087
Sequence    

Annotation

kegg
ID rcu:RCOM_1618270
description translation initiation factor 2b, delta subunit, putative
nr
ID XP_012092951.1
description PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
swissprot
ID Q9UI10
description Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4 PE=1 SV=2
trembl
ID A0A067JJB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05844 PE=3 SV=1
Gene Ontology
ID GO:0044237
description translation initiation factor eif-2b subunit delta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20331: 19669-28900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002006_040 0.0 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
2 Hb_000976_210 0.0623174468 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
3 Hb_002043_140 0.0653606184 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
4 Hb_023226_080 0.0667568161 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
5 Hb_003729_030 0.0719155809 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
6 Hb_000402_230 0.0724824025 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
7 Hb_009615_170 0.0745778667 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
8 Hb_008103_060 0.0771264556 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
9 Hb_010712_090 0.0782559662 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
10 Hb_159558_010 0.0785312251 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
11 Hb_002890_090 0.0792528527 - - Auxin response factor 1 [Glycine soja]
12 Hb_003866_080 0.0793567268 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
13 Hb_001410_020 0.0793672771 - - cdk8, putative [Ricinus communis]
14 Hb_031042_050 0.0794094999 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
15 Hb_000069_470 0.0798760067 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
16 Hb_002253_080 0.0799020174 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
17 Hb_000614_210 0.0813120416 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
18 Hb_000317_370 0.0814604616 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
19 Hb_004553_030 0.0815436295 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
20 Hb_002217_170 0.0816690286 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_002006_040 Hb_002006_040 Hb_000976_210 Hb_000976_210 Hb_002006_040--Hb_000976_210 Hb_002043_140 Hb_002043_140 Hb_002006_040--Hb_002043_140 Hb_023226_080 Hb_023226_080 Hb_002006_040--Hb_023226_080 Hb_003729_030 Hb_003729_030 Hb_002006_040--Hb_003729_030 Hb_000402_230 Hb_000402_230 Hb_002006_040--Hb_000402_230 Hb_009615_170 Hb_009615_170 Hb_002006_040--Hb_009615_170 Hb_000976_210--Hb_002043_140 Hb_003082_010 Hb_003082_010 Hb_000976_210--Hb_003082_010 Hb_002217_170 Hb_002217_170 Hb_000976_210--Hb_002217_170 Hb_000317_370 Hb_000317_370 Hb_000976_210--Hb_000317_370 Hb_002890_090 Hb_002890_090 Hb_000976_210--Hb_002890_090 Hb_011491_010 Hb_011491_010 Hb_002043_140--Hb_011491_010 Hb_008103_060 Hb_008103_060 Hb_002043_140--Hb_008103_060 Hb_007163_120 Hb_007163_120 Hb_002043_140--Hb_007163_120 Hb_002043_140--Hb_009615_170 Hb_005542_140 Hb_005542_140 Hb_023226_080--Hb_005542_140 Hb_000176_100 Hb_000176_100 Hb_023226_080--Hb_000176_100 Hb_000069_410 Hb_000069_410 Hb_023226_080--Hb_000069_410 Hb_159558_010 Hb_159558_010 Hb_023226_080--Hb_159558_010 Hb_000012_260 Hb_000012_260 Hb_023226_080--Hb_000012_260 Hb_023226_080--Hb_009615_170 Hb_000321_150 Hb_000321_150 Hb_003729_030--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_003729_030--Hb_000069_470 Hb_002253_080 Hb_002253_080 Hb_003729_030--Hb_002253_080 Hb_000120_660 Hb_000120_660 Hb_003729_030--Hb_000120_660 Hb_000260_070 Hb_000260_070 Hb_003729_030--Hb_000260_070 Hb_011242_060 Hb_011242_060 Hb_003729_030--Hb_011242_060 Hb_004143_100 Hb_004143_100 Hb_000402_230--Hb_004143_100 Hb_001089_050 Hb_001089_050 Hb_000402_230--Hb_001089_050 Hb_000009_500 Hb_000009_500 Hb_000402_230--Hb_000009_500 Hb_008253_020 Hb_008253_020 Hb_000402_230--Hb_008253_020 Hb_003866_080 Hb_003866_080 Hb_000402_230--Hb_003866_080 Hb_011849_040 Hb_011849_040 Hb_000402_230--Hb_011849_040 Hb_001821_090 Hb_001821_090 Hb_009615_170--Hb_001821_090 Hb_012395_140 Hb_012395_140 Hb_009615_170--Hb_012395_140 Hb_004884_150 Hb_004884_150 Hb_009615_170--Hb_004884_150 Hb_009615_170--Hb_159558_010 Hb_000579_230 Hb_000579_230 Hb_009615_170--Hb_000579_230 Hb_000174_060 Hb_000174_060 Hb_009615_170--Hb_000174_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4142 26.8326 10.328 13.2401 15.6465 14.3293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.32315 11.175 14.1858 14.602 10.2117

CAGE analysis