Hb_001141_390

Information

Type -
Description -
Location Contig1141: 280505-288044
Sequence    

Annotation

kegg
ID rcu:RCOM_0912170
description hypothetical protein
nr
ID XP_012069623.1
description PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
swissprot
ID F4IXE7
description Increased DNA methylation 1 OS=Arabidopsis thaliana GN=IDM1 PE=1 SV=1
trembl
ID A0A067KVD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02169 PE=4 SV=1
Gene Ontology
ID GO:0003824
description acyl- n-acyltransferase with ring fyve phd-type zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04283: 280395-280632
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_390 0.0 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
2 Hb_000204_210 0.0830116129 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
3 Hb_000680_050 0.0900484651 - - hypothetical protein JCGZ_24767 [Jatropha curcas]
4 Hb_002374_310 0.090719087 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
5 Hb_048219_010 0.0927821016 - - coronatine-insensitive 1 [Hevea brasiliensis]
6 Hb_005015_070 0.09376413 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
7 Hb_001584_150 0.0962915746 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
8 Hb_002813_050 0.0964666558 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
9 Hb_000062_250 0.0966814657 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
10 Hb_168697_010 0.097440966 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
11 Hb_000140_230 0.0984955206 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
12 Hb_000574_410 0.0991622026 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600 [Jatropha curcas]
13 Hb_000025_520 0.1052242429 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27110 [Jatropha curcas]
14 Hb_000398_010 0.1056515073 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000213_100 0.1060275898 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
16 Hb_001621_150 0.1063535871 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
17 Hb_031042_020 0.1084925569 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
18 Hb_000264_320 0.1091563164 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
19 Hb_001507_020 0.1101901693 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
20 Hb_012395_220 0.1111179882 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]

Gene co-expression network

sample Hb_001141_390 Hb_001141_390 Hb_000204_210 Hb_000204_210 Hb_001141_390--Hb_000204_210 Hb_000680_050 Hb_000680_050 Hb_001141_390--Hb_000680_050 Hb_002374_310 Hb_002374_310 Hb_001141_390--Hb_002374_310 Hb_048219_010 Hb_048219_010 Hb_001141_390--Hb_048219_010 Hb_005015_070 Hb_005015_070 Hb_001141_390--Hb_005015_070 Hb_001584_150 Hb_001584_150 Hb_001141_390--Hb_001584_150 Hb_000204_210--Hb_001584_150 Hb_008500_010 Hb_008500_010 Hb_000204_210--Hb_008500_010 Hb_002678_020 Hb_002678_020 Hb_000204_210--Hb_002678_020 Hb_001507_020 Hb_001507_020 Hb_000204_210--Hb_001507_020 Hb_009486_200 Hb_009486_200 Hb_000204_210--Hb_009486_200 Hb_168697_010 Hb_168697_010 Hb_000680_050--Hb_168697_010 Hb_000680_050--Hb_048219_010 Hb_012395_220 Hb_012395_220 Hb_000680_050--Hb_012395_220 Hb_002813_050 Hb_002813_050 Hb_000680_050--Hb_002813_050 Hb_000680_050--Hb_005015_070 Hb_001856_230 Hb_001856_230 Hb_002374_310--Hb_001856_230 Hb_001621_150 Hb_001621_150 Hb_002374_310--Hb_001621_150 Hb_000181_070 Hb_000181_070 Hb_002374_310--Hb_000181_070 Hb_002374_310--Hb_005015_070 Hb_007532_030 Hb_007532_030 Hb_002374_310--Hb_007532_030 Hb_012564_030 Hb_012564_030 Hb_048219_010--Hb_012564_030 Hb_004767_050 Hb_004767_050 Hb_048219_010--Hb_004767_050 Hb_001818_070 Hb_001818_070 Hb_048219_010--Hb_001818_070 Hb_048219_010--Hb_001856_230 Hb_003544_110 Hb_003544_110 Hb_048219_010--Hb_003544_110 Hb_011491_010 Hb_011491_010 Hb_048219_010--Hb_011491_010 Hb_000696_150 Hb_000696_150 Hb_005015_070--Hb_000696_150 Hb_004374_070 Hb_004374_070 Hb_005015_070--Hb_004374_070 Hb_010172_090 Hb_010172_090 Hb_005015_070--Hb_010172_090 Hb_000866_220 Hb_000866_220 Hb_005015_070--Hb_000866_220 Hb_005015_070--Hb_048219_010 Hb_001584_150--Hb_008500_010 Hb_007757_110 Hb_007757_110 Hb_001584_150--Hb_007757_110 Hb_000062_250 Hb_000062_250 Hb_001584_150--Hb_000062_250 Hb_001584_150--Hb_001507_020 Hb_002311_040 Hb_002311_040 Hb_001584_150--Hb_002311_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.0709 52.1721 11.8637 14.7414 29.5905 33.5767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.8262 26.5822 64.6593 14.9716 16.1162

CAGE analysis