Hb_001621_150

Information

Type -
Description -
Location Contig1621: 206416-207621
Sequence    

Annotation

kegg
ID cam:101511045
description E3 ubiquitin-protein ligase RING1-like
nr
ID XP_012088862.1
description PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID A0A067LKR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01429 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14636: 206395-207967
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001621_150 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
2 Hb_005016_160 0.0937776901 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
3 Hb_002374_310 0.0981498231 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
4 Hb_000732_140 0.1009559965 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
5 Hb_000567_210 0.1016793945 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
6 Hb_001021_170 0.1039269326 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
7 Hb_004785_060 0.1059640893 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
8 Hb_001141_390 0.1063535871 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
9 Hb_001277_270 0.1066042534 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
10 Hb_175338_030 0.1077919781 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
11 Hb_003055_060 0.1081966822 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
12 Hb_000062_250 0.1082063512 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
13 Hb_000398_010 0.1095218162 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003052_140 0.1096994398 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
15 Hb_007416_180 0.1114561798 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
16 Hb_000859_060 0.1116626409 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
17 Hb_000181_070 0.1117038597 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000336_250 0.1119725996 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
19 Hb_015807_070 0.1127253337 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
20 Hb_000574_410 0.1132729898 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600 [Jatropha curcas]

Gene co-expression network

sample Hb_001621_150 Hb_001621_150 Hb_005016_160 Hb_005016_160 Hb_001621_150--Hb_005016_160 Hb_002374_310 Hb_002374_310 Hb_001621_150--Hb_002374_310 Hb_000732_140 Hb_000732_140 Hb_001621_150--Hb_000732_140 Hb_000567_210 Hb_000567_210 Hb_001621_150--Hb_000567_210 Hb_001021_170 Hb_001021_170 Hb_001621_150--Hb_001021_170 Hb_004785_060 Hb_004785_060 Hb_001621_150--Hb_004785_060 Hb_005541_010 Hb_005541_010 Hb_005016_160--Hb_005541_010 Hb_000334_220 Hb_000334_220 Hb_005016_160--Hb_000334_220 Hb_012055_060 Hb_012055_060 Hb_005016_160--Hb_012055_060 Hb_003052_140 Hb_003052_140 Hb_005016_160--Hb_003052_140 Hb_012564_030 Hb_012564_030 Hb_005016_160--Hb_012564_030 Hb_000336_250 Hb_000336_250 Hb_005016_160--Hb_000336_250 Hb_001141_390 Hb_001141_390 Hb_002374_310--Hb_001141_390 Hb_001856_230 Hb_001856_230 Hb_002374_310--Hb_001856_230 Hb_000181_070 Hb_000181_070 Hb_002374_310--Hb_000181_070 Hb_005015_070 Hb_005015_070 Hb_002374_310--Hb_005015_070 Hb_007532_030 Hb_007532_030 Hb_002374_310--Hb_007532_030 Hb_077562_050 Hb_077562_050 Hb_000732_140--Hb_077562_050 Hb_000732_140--Hb_000567_210 Hb_002301_220 Hb_002301_220 Hb_000732_140--Hb_002301_220 Hb_000453_170 Hb_000453_170 Hb_000732_140--Hb_000453_170 Hb_005188_050 Hb_005188_050 Hb_000732_140--Hb_005188_050 Hb_000085_100 Hb_000085_100 Hb_000732_140--Hb_000085_100 Hb_000859_060 Hb_000859_060 Hb_000567_210--Hb_000859_060 Hb_001623_140 Hb_001623_140 Hb_000567_210--Hb_001623_140 Hb_000203_160 Hb_000203_160 Hb_000567_210--Hb_000203_160 Hb_000567_210--Hb_003052_140 Hb_003055_060 Hb_003055_060 Hb_000567_210--Hb_003055_060 Hb_015807_070 Hb_015807_070 Hb_001021_170--Hb_015807_070 Hb_004355_020 Hb_004355_020 Hb_001021_170--Hb_004355_020 Hb_000768_040 Hb_000768_040 Hb_001021_170--Hb_000768_040 Hb_045793_010 Hb_045793_010 Hb_001021_170--Hb_045793_010 Hb_006847_040 Hb_006847_040 Hb_001021_170--Hb_006847_040 Hb_007416_180 Hb_007416_180 Hb_001021_170--Hb_007416_180 Hb_004785_060--Hb_000859_060 Hb_000000_370 Hb_000000_370 Hb_004785_060--Hb_000000_370 Hb_012807_050 Hb_012807_050 Hb_004785_060--Hb_012807_050 Hb_004785_060--Hb_001021_170 Hb_004785_060--Hb_004355_020 Hb_004785_060--Hb_000181_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
101.913 103.456 35.2243 32.8723 69.8424 58.8578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.2789 56.5951 113.278 25.0328 35.5943

CAGE analysis