Hb_000441_140

Information

Type transcription factor
Description TF Family: NF-YA
Location Contig441: 175148-181049
Sequence    

Annotation

kegg
ID pop:POPTR_0011s10080g
description CCAAT-binding transcription factor family protein
nr
ID XP_012075625.1
description PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2 [Jatropha curcas]
swissprot
ID Q84JP1
description Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1
trembl
ID A0A067KSV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09222 PE=4 SV=1
Gene Ontology
ID GO:0016602
description nuclear transcription factor y subunit a-7-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42634: 175174-180989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_140 0.0 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2 [Jatropha curcas]
2 Hb_010997_080 0.0629515169 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
3 Hb_002205_110 0.0648666216 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002026_210 0.0754273815 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
5 Hb_001205_240 0.0773772198 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
6 Hb_000028_370 0.0776276917 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
7 Hb_000030_190 0.0811157038 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
8 Hb_003680_120 0.0848286632 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
9 Hb_000173_490 0.0849012269 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
10 Hb_000049_260 0.0849606865 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_020831_030 0.0864354456 - - conserved hypothetical protein [Ricinus communis]
12 Hb_028962_020 0.0867975944 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
13 Hb_004117_110 0.0872052037 - - hypothetical protein POPTR_0016s14420g [Populus trichocarpa]
14 Hb_000000_270 0.0910796394 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
15 Hb_005269_040 0.091315563 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06270 [Jatropha curcas]
16 Hb_013399_100 0.0914543786 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000732_010 0.0917969206 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
18 Hb_000009_500 0.0923539395 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
19 Hb_144528_010 0.0926987953 - - type II inositol 5-phosphatase, putative [Ricinus communis]
20 Hb_028512_020 0.0927341887 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000441_140 Hb_000441_140 Hb_010997_080 Hb_010997_080 Hb_000441_140--Hb_010997_080 Hb_002205_110 Hb_002205_110 Hb_000441_140--Hb_002205_110 Hb_002026_210 Hb_002026_210 Hb_000441_140--Hb_002026_210 Hb_001205_240 Hb_001205_240 Hb_000441_140--Hb_001205_240 Hb_000028_370 Hb_000028_370 Hb_000441_140--Hb_000028_370 Hb_000030_190 Hb_000030_190 Hb_000441_140--Hb_000030_190 Hb_010997_080--Hb_002205_110 Hb_010997_080--Hb_000028_370 Hb_000173_490 Hb_000173_490 Hb_010997_080--Hb_000173_490 Hb_003389_040 Hb_003389_040 Hb_010997_080--Hb_003389_040 Hb_005048_130 Hb_005048_130 Hb_010997_080--Hb_005048_130 Hb_002205_110--Hb_000028_370 Hb_002205_110--Hb_001205_240 Hb_002232_410 Hb_002232_410 Hb_002205_110--Hb_002232_410 Hb_001408_040 Hb_001408_040 Hb_002205_110--Hb_001408_040 Hb_028512_020 Hb_028512_020 Hb_002026_210--Hb_028512_020 Hb_011849_040 Hb_011849_040 Hb_002026_210--Hb_011849_040 Hb_000009_500 Hb_000009_500 Hb_002026_210--Hb_000009_500 Hb_000614_210 Hb_000614_210 Hb_002026_210--Hb_000614_210 Hb_000923_010 Hb_000923_010 Hb_002026_210--Hb_000923_010 Hb_000340_530 Hb_000340_530 Hb_002026_210--Hb_000340_530 Hb_001205_240--Hb_000028_370 Hb_003761_010 Hb_003761_010 Hb_001205_240--Hb_003761_010 Hb_008725_230 Hb_008725_230 Hb_001205_240--Hb_008725_230 Hb_000732_010 Hb_000732_010 Hb_001205_240--Hb_000732_010 Hb_000710_060 Hb_000710_060 Hb_001205_240--Hb_000710_060 Hb_000028_370--Hb_008725_230 Hb_000028_370--Hb_002232_410 Hb_000028_370--Hb_003761_010 Hb_168978_010 Hb_168978_010 Hb_000028_370--Hb_168978_010 Hb_000789_310 Hb_000789_310 Hb_000030_190--Hb_000789_310 Hb_005291_030 Hb_005291_030 Hb_000030_190--Hb_005291_030 Hb_000345_380 Hb_000345_380 Hb_000030_190--Hb_000345_380 Hb_001409_020 Hb_001409_020 Hb_000030_190--Hb_001409_020 Hb_007576_110 Hb_007576_110 Hb_000030_190--Hb_007576_110 Hb_000030_190--Hb_000173_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6662 27.7878 14.3303 25.74 16.514 28.2184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.3006 20.3761 18.0194 13.9048 14.2967

CAGE analysis