Hb_115241_010

Information

Type -
Description -
Location Contig115241: 523-2453
Sequence    

Annotation

kegg
ID rcu:RCOM_0300970
description hypothetical protein
nr
ID XP_012064976.1
description PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
swissprot
ID Q9LX14
description Protein UPSTREAM OF FLC OS=Arabidopsis thaliana GN=UFC PE=2 SV=1
trembl
ID A0A067L6Z8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05659 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115241_010 0.0 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
2 Hb_000975_360 0.0819542682 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001564_080 0.1259003072 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
4 Hb_001894_050 0.1274114946 - - PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
5 Hb_001189_140 0.130868857 - - -
6 Hb_021888_050 0.1311841943 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
7 Hb_005653_060 0.1382565753 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
8 Hb_002042_130 0.143093085 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
9 Hb_000432_040 0.1468893024 - - PREDICTED: remorin-like [Jatropha curcas]
10 Hb_001902_190 0.1485864583 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
11 Hb_002486_040 0.1490697263 - - -
12 Hb_000451_070 0.152410814 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_174865_030 0.1538210034 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
14 Hb_001047_150 0.1541489436 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
15 Hb_000221_210 0.1551939826 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
16 Hb_001439_100 0.1573517783 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
17 Hb_003994_060 0.1588647085 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
18 Hb_004994_140 0.1618167686 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]
19 Hb_003376_350 0.1626619822 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
20 Hb_002435_110 0.162685891 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_115241_010 Hb_115241_010 Hb_000975_360 Hb_000975_360 Hb_115241_010--Hb_000975_360 Hb_001564_080 Hb_001564_080 Hb_115241_010--Hb_001564_080 Hb_001894_050 Hb_001894_050 Hb_115241_010--Hb_001894_050 Hb_001189_140 Hb_001189_140 Hb_115241_010--Hb_001189_140 Hb_021888_050 Hb_021888_050 Hb_115241_010--Hb_021888_050 Hb_005653_060 Hb_005653_060 Hb_115241_010--Hb_005653_060 Hb_002042_130 Hb_002042_130 Hb_000975_360--Hb_002042_130 Hb_000465_230 Hb_000465_230 Hb_000975_360--Hb_000465_230 Hb_000975_360--Hb_021888_050 Hb_000975_360--Hb_001189_140 Hb_000975_360--Hb_001894_050 Hb_001564_080--Hb_005653_060 Hb_001564_080--Hb_001894_050 Hb_005551_050 Hb_005551_050 Hb_001564_080--Hb_005551_050 Hb_189208_020 Hb_189208_020 Hb_001564_080--Hb_189208_020 Hb_001817_160 Hb_001817_160 Hb_001564_080--Hb_001817_160 Hb_001894_050--Hb_001817_160 Hb_001894_050--Hb_189208_020 Hb_000451_070 Hb_000451_070 Hb_001894_050--Hb_000451_070 Hb_000915_160 Hb_000915_160 Hb_001894_050--Hb_000915_160 Hb_001894_050--Hb_002042_130 Hb_000363_210 Hb_000363_210 Hb_001189_140--Hb_000363_210 Hb_001892_020 Hb_001892_020 Hb_001189_140--Hb_001892_020 Hb_003376_350 Hb_003376_350 Hb_001189_140--Hb_003376_350 Hb_165026_020 Hb_165026_020 Hb_001189_140--Hb_165026_020 Hb_010883_090 Hb_010883_090 Hb_001189_140--Hb_010883_090 Hb_000230_390 Hb_000230_390 Hb_001189_140--Hb_000230_390 Hb_000948_080 Hb_000948_080 Hb_021888_050--Hb_000948_080 Hb_000649_240 Hb_000649_240 Hb_021888_050--Hb_000649_240 Hb_005568_080 Hb_005568_080 Hb_021888_050--Hb_005568_080 Hb_001902_190 Hb_001902_190 Hb_021888_050--Hb_001902_190 Hb_005653_060--Hb_005551_050 Hb_000635_180 Hb_000635_180 Hb_005653_060--Hb_000635_180 Hb_007426_180 Hb_007426_180 Hb_005653_060--Hb_007426_180 Hb_000221_210 Hb_000221_210 Hb_005653_060--Hb_000221_210 Hb_003747_220 Hb_003747_220 Hb_005653_060--Hb_003747_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.51191 10.7984 2.87017 2.63967 3.71268 2.96726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5318 8.82662 7.068 6.67079 0.834303

CAGE analysis