Hb_005568_080

Information

Type -
Description -
Location Contig5568: 86595-87789
Sequence    

Annotation

kegg
ID rcu:RCOM_0624910
description hypothetical protein
nr
ID XP_002532259.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T1Z0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0624910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005568_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_021888_050 0.1493081007 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
3 Hb_000326_060 0.1524919285 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
4 Hb_033772_050 0.1557029892 transcription factor TF Family: MYB PREDICTED: myb-related protein A-like [Jatropha curcas]
5 Hb_009486_190 0.1730121581 - - ATP binding protein, putative [Ricinus communis]
6 Hb_009510_040 0.1747852745 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
7 Hb_003052_220 0.17516085 - - -
8 Hb_000948_080 0.1771532631 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
9 Hb_000703_250 0.1817276576 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Jatropha curcas]
10 Hb_000879_010 0.1846794122 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
11 Hb_000243_140 0.1891667578 transcription factor TF Family: SRS Lateral root primordium protein-related, putative [Theobroma cacao]
12 Hb_079268_010 0.1940101008 - - -
13 Hb_001619_080 0.1962451821 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000914_090 0.1983644798 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
15 Hb_001117_070 0.198607575 - - 30S ribosomal protein S19, putative [Ricinus communis]
16 Hb_115241_010 0.2004101037 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
17 Hb_000975_360 0.2004483239 - - conserved hypothetical protein [Ricinus communis]
18 Hb_013839_010 0.202025832 - - Angio-associated migratory cell protein, putative [Ricinus communis]
19 Hb_004230_040 0.203076734 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002798_060 0.2042928138 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]

Gene co-expression network

sample Hb_005568_080 Hb_005568_080 Hb_021888_050 Hb_021888_050 Hb_005568_080--Hb_021888_050 Hb_000326_060 Hb_000326_060 Hb_005568_080--Hb_000326_060 Hb_033772_050 Hb_033772_050 Hb_005568_080--Hb_033772_050 Hb_009486_190 Hb_009486_190 Hb_005568_080--Hb_009486_190 Hb_009510_040 Hb_009510_040 Hb_005568_080--Hb_009510_040 Hb_003052_220 Hb_003052_220 Hb_005568_080--Hb_003052_220 Hb_115241_010 Hb_115241_010 Hb_021888_050--Hb_115241_010 Hb_000975_360 Hb_000975_360 Hb_021888_050--Hb_000975_360 Hb_000948_080 Hb_000948_080 Hb_021888_050--Hb_000948_080 Hb_000649_240 Hb_000649_240 Hb_021888_050--Hb_000649_240 Hb_001902_190 Hb_001902_190 Hb_021888_050--Hb_001902_190 Hb_000326_060--Hb_033772_050 Hb_009265_090 Hb_009265_090 Hb_000326_060--Hb_009265_090 Hb_000326_060--Hb_009486_190 Hb_000264_090 Hb_000264_090 Hb_000326_060--Hb_000264_090 Hb_000363_140 Hb_000363_140 Hb_000326_060--Hb_000363_140 Hb_033772_050--Hb_000363_140 Hb_033772_050--Hb_009486_190 Hb_003992_080 Hb_003992_080 Hb_033772_050--Hb_003992_080 Hb_004129_150 Hb_004129_150 Hb_033772_050--Hb_004129_150 Hb_002798_060 Hb_002798_060 Hb_009486_190--Hb_002798_060 Hb_000196_090 Hb_000196_090 Hb_009486_190--Hb_000196_090 Hb_016604_020 Hb_016604_020 Hb_009486_190--Hb_016604_020 Hb_002540_030 Hb_002540_030 Hb_009486_190--Hb_002540_030 Hb_002609_280 Hb_002609_280 Hb_009486_190--Hb_002609_280 Hb_165669_010 Hb_165669_010 Hb_009510_040--Hb_165669_010 Hb_000243_140 Hb_000243_140 Hb_009510_040--Hb_000243_140 Hb_000503_050 Hb_000503_050 Hb_009510_040--Hb_000503_050 Hb_000003_050 Hb_000003_050 Hb_009510_040--Hb_000003_050 Hb_002577_010 Hb_002577_010 Hb_009510_040--Hb_002577_010 Hb_000419_060 Hb_000419_060 Hb_009510_040--Hb_000419_060 Hb_001619_080 Hb_001619_080 Hb_003052_220--Hb_001619_080 Hb_003095_040 Hb_003095_040 Hb_003052_220--Hb_003095_040 Hb_002138_010 Hb_002138_010 Hb_003052_220--Hb_002138_010 Hb_000260_290 Hb_000260_290 Hb_003052_220--Hb_000260_290 Hb_015690_020 Hb_015690_020 Hb_003052_220--Hb_015690_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.795558 1.44988 0.0798954 0.259182 0.427249 0.279248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30504 2.4724 0.85096 1.22345 0

CAGE analysis