Hb_033772_050

Information

Type transcription factor
Description TF Family: MYB
Location Contig33772: 83355-84095
Sequence    

Annotation

kegg
ID rcu:RCOM_1591910
description r2r3-myb transcription factor, putative
nr
ID XP_012071707.1
description PREDICTED: myb-related protein A-like [Jatropha curcas]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID A0A067KQI3
description MYB family protein OS=Jatropha curcas GN=JCGZ_04322 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033772_050 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein A-like [Jatropha curcas]
2 Hb_000363_140 0.1299816602 - - hypothetical protein CICLE_v10009052mg [Citrus clementina]
3 Hb_009486_190 0.1513314162 - - ATP binding protein, putative [Ricinus communis]
4 Hb_003992_080 0.1535315176 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
5 Hb_005568_080 0.1557029892 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000326_060 0.1567051788 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
7 Hb_004129_150 0.1588713023 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
8 Hb_005701_030 0.1685342666 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000692_020 0.1726358989 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
10 Hb_004296_020 0.1738282648 - - unnamed protein product [Coffea canephora]
11 Hb_001364_030 0.174318785 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
12 Hb_016604_020 0.1793108108 - - -
13 Hb_007943_140 0.183800138 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
14 Hb_000914_090 0.1857892209 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
15 Hb_002053_060 0.1884421117 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
16 Hb_000094_110 0.1907666974 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010897_030 0.1941108805 - - conserved hypothetical protein [Ricinus communis]
18 Hb_021888_050 0.1944620419 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
19 Hb_004109_020 0.1974388771 - - 60S ribosomal protein L18aA [Hevea brasiliensis]
20 Hb_174865_030 0.1978804625 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]

Gene co-expression network

sample Hb_033772_050 Hb_033772_050 Hb_000363_140 Hb_000363_140 Hb_033772_050--Hb_000363_140 Hb_009486_190 Hb_009486_190 Hb_033772_050--Hb_009486_190 Hb_003992_080 Hb_003992_080 Hb_033772_050--Hb_003992_080 Hb_005568_080 Hb_005568_080 Hb_033772_050--Hb_005568_080 Hb_000326_060 Hb_000326_060 Hb_033772_050--Hb_000326_060 Hb_004129_150 Hb_004129_150 Hb_033772_050--Hb_004129_150 Hb_001364_030 Hb_001364_030 Hb_000363_140--Hb_001364_030 Hb_002798_050 Hb_002798_050 Hb_000363_140--Hb_002798_050 Hb_000914_090 Hb_000914_090 Hb_000363_140--Hb_000914_090 Hb_002909_070 Hb_002909_070 Hb_000363_140--Hb_002909_070 Hb_174865_030 Hb_174865_030 Hb_000363_140--Hb_174865_030 Hb_002798_060 Hb_002798_060 Hb_009486_190--Hb_002798_060 Hb_000196_090 Hb_000196_090 Hb_009486_190--Hb_000196_090 Hb_016604_020 Hb_016604_020 Hb_009486_190--Hb_016604_020 Hb_002540_030 Hb_002540_030 Hb_009486_190--Hb_002540_030 Hb_002609_280 Hb_002609_280 Hb_009486_190--Hb_002609_280 Hb_003992_080--Hb_016604_020 Hb_002053_060 Hb_002053_060 Hb_003992_080--Hb_002053_060 Hb_002298_050 Hb_002298_050 Hb_003992_080--Hb_002298_050 Hb_000094_110 Hb_000094_110 Hb_003992_080--Hb_000094_110 Hb_003992_080--Hb_009486_190 Hb_021888_050 Hb_021888_050 Hb_005568_080--Hb_021888_050 Hb_005568_080--Hb_000326_060 Hb_005568_080--Hb_009486_190 Hb_009510_040 Hb_009510_040 Hb_005568_080--Hb_009510_040 Hb_003052_220 Hb_003052_220 Hb_005568_080--Hb_003052_220 Hb_009265_090 Hb_009265_090 Hb_000326_060--Hb_009265_090 Hb_000326_060--Hb_009486_190 Hb_000264_090 Hb_000264_090 Hb_000326_060--Hb_000264_090 Hb_000326_060--Hb_000363_140 Hb_000175_130 Hb_000175_130 Hb_004129_150--Hb_000175_130 Hb_004129_150--Hb_000094_110 Hb_006738_010 Hb_006738_010 Hb_004129_150--Hb_006738_010 Hb_000032_350 Hb_000032_350 Hb_004129_150--Hb_000032_350 Hb_007943_140 Hb_007943_140 Hb_004129_150--Hb_007943_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6395 29.9487 2.38155 6.86682 7.05868 5.53215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.6948 75.4582 26.082 10.8862 0.819736

CAGE analysis