Hb_000326_060

Information

Type -
Description -
Location Contig326: 65765-80249
Sequence    

Annotation

kegg
ID sot:102604101
description uncharacterized LOC102604101
nr
ID XP_009762955.1
description PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID B8B457
description Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_23536 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34302: 79336-79648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000326_060 0.0 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
2 Hb_005568_080 0.1524919285 - - conserved hypothetical protein [Ricinus communis]
3 Hb_033772_050 0.1567051788 transcription factor TF Family: MYB PREDICTED: myb-related protein A-like [Jatropha curcas]
4 Hb_009265_090 0.1652141073 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
5 Hb_009486_190 0.1660230358 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000264_090 0.1670873695 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
7 Hb_000363_140 0.168480634 - - hypothetical protein CICLE_v10009052mg [Citrus clementina]
8 Hb_000914_090 0.1723718664 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
9 Hb_000948_080 0.1784825341 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
10 Hb_000975_360 0.1800480463 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006775_090 0.1828443834 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
12 Hb_002316_060 0.1837609444 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
13 Hb_008771_030 0.1838237888 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
14 Hb_174865_030 0.1839883443 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
15 Hb_000879_010 0.1856740151 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
16 Hb_155764_020 0.1879507499 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
17 Hb_003446_050 0.1885146009 - - hypothetical protein B456_002G034000, partial [Gossypium raimondii]
18 Hb_114893_030 0.1897102716 - - PREDICTED: ribosome-recycling factor, chloroplastic [Jatropha curcas]
19 Hb_002182_060 0.1902658882 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
20 Hb_002811_230 0.1904414811 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000326_060 Hb_000326_060 Hb_005568_080 Hb_005568_080 Hb_000326_060--Hb_005568_080 Hb_033772_050 Hb_033772_050 Hb_000326_060--Hb_033772_050 Hb_009265_090 Hb_009265_090 Hb_000326_060--Hb_009265_090 Hb_009486_190 Hb_009486_190 Hb_000326_060--Hb_009486_190 Hb_000264_090 Hb_000264_090 Hb_000326_060--Hb_000264_090 Hb_000363_140 Hb_000363_140 Hb_000326_060--Hb_000363_140 Hb_021888_050 Hb_021888_050 Hb_005568_080--Hb_021888_050 Hb_005568_080--Hb_033772_050 Hb_005568_080--Hb_009486_190 Hb_009510_040 Hb_009510_040 Hb_005568_080--Hb_009510_040 Hb_003052_220 Hb_003052_220 Hb_005568_080--Hb_003052_220 Hb_033772_050--Hb_000363_140 Hb_033772_050--Hb_009486_190 Hb_003992_080 Hb_003992_080 Hb_033772_050--Hb_003992_080 Hb_004129_150 Hb_004129_150 Hb_033772_050--Hb_004129_150 Hb_002375_090 Hb_002375_090 Hb_009265_090--Hb_002375_090 Hb_000258_350 Hb_000258_350 Hb_009265_090--Hb_000258_350 Hb_009265_090--Hb_000264_090 Hb_114893_030 Hb_114893_030 Hb_009265_090--Hb_114893_030 Hb_015279_010 Hb_015279_010 Hb_009265_090--Hb_015279_010 Hb_000917_110 Hb_000917_110 Hb_009265_090--Hb_000917_110 Hb_002798_060 Hb_002798_060 Hb_009486_190--Hb_002798_060 Hb_000196_090 Hb_000196_090 Hb_009486_190--Hb_000196_090 Hb_016604_020 Hb_016604_020 Hb_009486_190--Hb_016604_020 Hb_002540_030 Hb_002540_030 Hb_009486_190--Hb_002540_030 Hb_002609_280 Hb_002609_280 Hb_009486_190--Hb_002609_280 Hb_000264_090--Hb_002609_280 Hb_001998_050 Hb_001998_050 Hb_000264_090--Hb_001998_050 Hb_002925_030 Hb_002925_030 Hb_000264_090--Hb_002925_030 Hb_155764_020 Hb_155764_020 Hb_000264_090--Hb_155764_020 Hb_003398_120 Hb_003398_120 Hb_000264_090--Hb_003398_120 Hb_001248_080 Hb_001248_080 Hb_000264_090--Hb_001248_080 Hb_001364_030 Hb_001364_030 Hb_000363_140--Hb_001364_030 Hb_002798_050 Hb_002798_050 Hb_000363_140--Hb_002798_050 Hb_000914_090 Hb_000914_090 Hb_000363_140--Hb_000914_090 Hb_002909_070 Hb_002909_070 Hb_000363_140--Hb_002909_070 Hb_174865_030 Hb_174865_030 Hb_000363_140--Hb_174865_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0787257 0.101052 0.0373699 0.0194695 0.0242921 0.0548822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.111032 0.26196 0.0799583 0.0703618 0

CAGE analysis