Hb_001364_030

Information

Type -
Description -
Location Contig1364: 7686-9964
Sequence    

Annotation

kegg
ID mdm:103444981
description TMV resistance protein N-like
nr
ID KDP28980.1
description hypothetical protein JCGZ_19531 [Jatropha curcas]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID A0A067K9L2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19531 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001364_030 0.0 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
2 Hb_000363_140 0.1326975758 - - hypothetical protein CICLE_v10009052mg [Citrus clementina]
3 Hb_005701_030 0.1697444038 - - conserved hypothetical protein [Ricinus communis]
4 Hb_033772_050 0.174318785 transcription factor TF Family: MYB PREDICTED: myb-related protein A-like [Jatropha curcas]
5 Hb_000260_310 0.1878596906 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
6 Hb_016604_020 0.1892318996 - - -
7 Hb_009486_190 0.1997688722 - - ATP binding protein, putative [Ricinus communis]
8 Hb_002007_190 0.2005359755 - - hypothetical protein RCOM_1432220 [Ricinus communis]
9 Hb_000914_090 0.2084957768 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
10 Hb_004129_150 0.2143201798 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
11 Hb_002053_060 0.2149665175 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
12 Hb_002909_070 0.2152841153 - - hypothetical protein POPTR_0006s03000g [Populus trichocarpa]
13 Hb_004296_020 0.2153058876 - - unnamed protein product [Coffea canephora]
14 Hb_002798_050 0.2160710944 - - l-allo-threonine aldolase, putative [Ricinus communis]
15 Hb_003992_080 0.2161937338 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
16 Hb_000165_010 0.2193652277 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
17 Hb_009974_030 0.219599268 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
18 Hb_005505_020 0.2212347819 - - Potassium channel AKT1, putative [Ricinus communis]
19 Hb_000042_030 0.223270896 transcription factor TF Family: NAC NAC domain protein, IPR003441 [Theobroma cacao]
20 Hb_003106_050 0.2250291729 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]

Gene co-expression network

sample Hb_001364_030 Hb_001364_030 Hb_000363_140 Hb_000363_140 Hb_001364_030--Hb_000363_140 Hb_005701_030 Hb_005701_030 Hb_001364_030--Hb_005701_030 Hb_033772_050 Hb_033772_050 Hb_001364_030--Hb_033772_050 Hb_000260_310 Hb_000260_310 Hb_001364_030--Hb_000260_310 Hb_016604_020 Hb_016604_020 Hb_001364_030--Hb_016604_020 Hb_009486_190 Hb_009486_190 Hb_001364_030--Hb_009486_190 Hb_000363_140--Hb_033772_050 Hb_002798_050 Hb_002798_050 Hb_000363_140--Hb_002798_050 Hb_000914_090 Hb_000914_090 Hb_000363_140--Hb_000914_090 Hb_002909_070 Hb_002909_070 Hb_000363_140--Hb_002909_070 Hb_174865_030 Hb_174865_030 Hb_000363_140--Hb_174865_030 Hb_005701_030--Hb_033772_050 Hb_005701_030--Hb_000363_140 Hb_004296_020 Hb_004296_020 Hb_005701_030--Hb_004296_020 Hb_000692_020 Hb_000692_020 Hb_005701_030--Hb_000692_020 Hb_004129_150 Hb_004129_150 Hb_005701_030--Hb_004129_150 Hb_033772_050--Hb_009486_190 Hb_003992_080 Hb_003992_080 Hb_033772_050--Hb_003992_080 Hb_005568_080 Hb_005568_080 Hb_033772_050--Hb_005568_080 Hb_000326_060 Hb_000326_060 Hb_033772_050--Hb_000326_060 Hb_033772_050--Hb_004129_150 Hb_000264_020 Hb_000264_020 Hb_000260_310--Hb_000264_020 Hb_003504_020 Hb_003504_020 Hb_000260_310--Hb_003504_020 Hb_019654_090 Hb_019654_090 Hb_000260_310--Hb_019654_090 Hb_002053_060 Hb_002053_060 Hb_000260_310--Hb_002053_060 Hb_000373_180 Hb_000373_180 Hb_000260_310--Hb_000373_180 Hb_001514_230 Hb_001514_230 Hb_000260_310--Hb_001514_230 Hb_016604_020--Hb_002053_060 Hb_002609_280 Hb_002609_280 Hb_016604_020--Hb_002609_280 Hb_003216_100 Hb_003216_100 Hb_016604_020--Hb_003216_100 Hb_002182_060 Hb_002182_060 Hb_016604_020--Hb_002182_060 Hb_016604_020--Hb_003992_080 Hb_000264_090 Hb_000264_090 Hb_016604_020--Hb_000264_090 Hb_002798_060 Hb_002798_060 Hb_009486_190--Hb_002798_060 Hb_000196_090 Hb_000196_090 Hb_009486_190--Hb_000196_090 Hb_009486_190--Hb_016604_020 Hb_002540_030 Hb_002540_030 Hb_009486_190--Hb_002540_030 Hb_009486_190--Hb_002609_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.204445 0.372987 0.0158089 0.0399667 0.0305968 0.141456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.338889 0.590419 0.324479 0.022746 0.0401733

CAGE analysis