Hb_000692_020

Information

Type -
Description -
Location Contig692: 35551-36036
Sequence    

Annotation

kegg
ID rcu:RCOM_1599370
description ring finger protein, putative
nr
ID XP_012073730.1
description PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
swissprot
ID Q8L9W3
description E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana GN=ATL23 PE=1 SV=2
trembl
ID A0A067KYE7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08170 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase atl23-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000692_020 0.0 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
2 Hb_002603_060 0.1389784398 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
3 Hb_004567_020 0.160737283 - - Small ubiquitin-related modifier 2 [Morus notabilis]
4 Hb_001017_070 0.1642161261 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000483_480 0.1646622486 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000816_230 0.1663484136 - - PREDICTED: adenine/guanine permease AZG1 [Jatropha curcas]
7 Hb_007943_140 0.1715632675 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
8 Hb_033772_050 0.1726358989 transcription factor TF Family: MYB PREDICTED: myb-related protein A-like [Jatropha curcas]
9 Hb_010897_030 0.1798338088 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004129_150 0.1839718875 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
11 Hb_000896_120 0.1901053937 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
12 Hb_000300_390 0.1937569484 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
13 Hb_000878_020 0.1942646972 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
14 Hb_004545_130 0.1958152047 - - uncharacterized protein LOC100305465 [Glycine max]
15 Hb_100180_010 0.1977100029 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
16 Hb_001511_140 0.1978746961 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
17 Hb_008066_030 0.19817158 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
18 Hb_120823_010 0.1987130281 - - -
19 Hb_004735_050 0.2002347582 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
20 Hb_002248_100 0.2009442865 - - hypothetical protein VITISV_027197 [Vitis vinifera]

Gene co-expression network

sample Hb_000692_020 Hb_000692_020 Hb_002603_060 Hb_002603_060 Hb_000692_020--Hb_002603_060 Hb_004567_020 Hb_004567_020 Hb_000692_020--Hb_004567_020 Hb_001017_070 Hb_001017_070 Hb_000692_020--Hb_001017_070 Hb_000483_480 Hb_000483_480 Hb_000692_020--Hb_000483_480 Hb_000816_230 Hb_000816_230 Hb_000692_020--Hb_000816_230 Hb_007943_140 Hb_007943_140 Hb_000692_020--Hb_007943_140 Hb_029904_040 Hb_029904_040 Hb_002603_060--Hb_029904_040 Hb_000789_110 Hb_000789_110 Hb_002603_060--Hb_000789_110 Hb_120823_010 Hb_120823_010 Hb_002603_060--Hb_120823_010 Hb_000300_390 Hb_000300_390 Hb_002603_060--Hb_000300_390 Hb_152910_020 Hb_152910_020 Hb_002603_060--Hb_152910_020 Hb_002316_120 Hb_002316_120 Hb_002603_060--Hb_002316_120 Hb_004567_020--Hb_120823_010 Hb_004545_130 Hb_004545_130 Hb_004567_020--Hb_004545_130 Hb_000878_020 Hb_000878_020 Hb_004567_020--Hb_000878_020 Hb_000110_170 Hb_000110_170 Hb_004567_020--Hb_000110_170 Hb_147752_010 Hb_147752_010 Hb_004567_020--Hb_147752_010 Hb_007254_080 Hb_007254_080 Hb_004567_020--Hb_007254_080 Hb_000881_080 Hb_000881_080 Hb_001017_070--Hb_000881_080 Hb_002248_100 Hb_002248_100 Hb_001017_070--Hb_002248_100 Hb_001017_070--Hb_007943_140 Hb_000635_080 Hb_000635_080 Hb_001017_070--Hb_000635_080 Hb_183086_040 Hb_183086_040 Hb_001017_070--Hb_183086_040 Hb_002918_140 Hb_002918_140 Hb_001017_070--Hb_002918_140 Hb_000483_480--Hb_002603_060 Hb_000483_480--Hb_004567_020 Hb_001105_090 Hb_001105_090 Hb_000483_480--Hb_001105_090 Hb_008066_030 Hb_008066_030 Hb_000483_480--Hb_008066_030 Hb_000031_080 Hb_000031_080 Hb_000483_480--Hb_000031_080 Hb_138455_010 Hb_138455_010 Hb_000816_230--Hb_138455_010 Hb_001386_050 Hb_001386_050 Hb_000816_230--Hb_001386_050 Hb_000816_230--Hb_000300_390 Hb_000816_230--Hb_000110_170 Hb_000816_230--Hb_000878_020 Hb_146225_010 Hb_146225_010 Hb_000816_230--Hb_146225_010 Hb_007943_140--Hb_002248_100 Hb_000963_030 Hb_000963_030 Hb_007943_140--Hb_000963_030 Hb_000172_420 Hb_000172_420 Hb_007943_140--Hb_000172_420 Hb_097007_010 Hb_097007_010 Hb_007943_140--Hb_097007_010 Hb_026398_010 Hb_026398_010 Hb_007943_140--Hb_026398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.89779 10.4126 0.386075 6.69168 2.32342 1.44714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.573 45.7523 15.4465 4.74512 1.84736

CAGE analysis