Hb_000483_480

Information

Type -
Description -
Location Contig483: 410257-412139
Sequence    

Annotation

kegg
ID rcu:RCOM_0192380
description hypothetical protein
nr
ID XP_002531781.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0L2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0192380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44847: 410264-412062 , PASA_asmbl_44848: 411160-411299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_480 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002603_060 0.158843348 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
3 Hb_000692_020 0.1646622486 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
4 Hb_004567_020 0.176380776 - - Small ubiquitin-related modifier 2 [Morus notabilis]
5 Hb_001105_090 0.1765709854 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
6 Hb_008066_030 0.1895057904 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
7 Hb_000031_080 0.1926749623 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
8 Hb_001123_210 0.1938444615 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
9 Hb_002774_050 0.2021875626 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
10 Hb_009778_040 0.2053714813 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
11 Hb_000152_100 0.2056728504 - - PREDICTED: probable protein phosphatase 2C 75 isoform X2 [Jatropha curcas]
12 Hb_098533_020 0.2077899976 - - PREDICTED: zinc finger AN1 domain-containing stress-associated protein 12 [Jatropha curcas]
13 Hb_010897_030 0.2083474075 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002341_020 0.2087488069 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
15 Hb_120823_010 0.2102882457 - - -
16 Hb_000809_060 0.2137031463 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
17 Hb_002243_060 0.2156253735 - - hypothetical protein POPTR_0022s00750g [Populus trichocarpa]
18 Hb_015430_010 0.2161861184 - - PREDICTED: uncharacterized protein LOC105125506 isoform X2 [Populus euphratica]
19 Hb_000676_340 0.2185233245 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000178_120 0.2192723134 - - PREDICTED: histone H2B [Jatropha curcas]

Gene co-expression network

sample Hb_000483_480 Hb_000483_480 Hb_002603_060 Hb_002603_060 Hb_000483_480--Hb_002603_060 Hb_000692_020 Hb_000692_020 Hb_000483_480--Hb_000692_020 Hb_004567_020 Hb_004567_020 Hb_000483_480--Hb_004567_020 Hb_001105_090 Hb_001105_090 Hb_000483_480--Hb_001105_090 Hb_008066_030 Hb_008066_030 Hb_000483_480--Hb_008066_030 Hb_000031_080 Hb_000031_080 Hb_000483_480--Hb_000031_080 Hb_029904_040 Hb_029904_040 Hb_002603_060--Hb_029904_040 Hb_000789_110 Hb_000789_110 Hb_002603_060--Hb_000789_110 Hb_120823_010 Hb_120823_010 Hb_002603_060--Hb_120823_010 Hb_000300_390 Hb_000300_390 Hb_002603_060--Hb_000300_390 Hb_152910_020 Hb_152910_020 Hb_002603_060--Hb_152910_020 Hb_002316_120 Hb_002316_120 Hb_002603_060--Hb_002316_120 Hb_000692_020--Hb_002603_060 Hb_000692_020--Hb_004567_020 Hb_001017_070 Hb_001017_070 Hb_000692_020--Hb_001017_070 Hb_000816_230 Hb_000816_230 Hb_000692_020--Hb_000816_230 Hb_007943_140 Hb_007943_140 Hb_000692_020--Hb_007943_140 Hb_004567_020--Hb_120823_010 Hb_004545_130 Hb_004545_130 Hb_004567_020--Hb_004545_130 Hb_000878_020 Hb_000878_020 Hb_004567_020--Hb_000878_020 Hb_000110_170 Hb_000110_170 Hb_004567_020--Hb_000110_170 Hb_147752_010 Hb_147752_010 Hb_004567_020--Hb_147752_010 Hb_007254_080 Hb_007254_080 Hb_004567_020--Hb_007254_080 Hb_009778_040 Hb_009778_040 Hb_001105_090--Hb_009778_040 Hb_004429_110 Hb_004429_110 Hb_001105_090--Hb_004429_110 Hb_007313_080 Hb_007313_080 Hb_001105_090--Hb_007313_080 Hb_001105_090--Hb_120823_010 Hb_000809_060 Hb_000809_060 Hb_001105_090--Hb_000809_060 Hb_002081_030 Hb_002081_030 Hb_001105_090--Hb_002081_030 Hb_000979_250 Hb_000979_250 Hb_008066_030--Hb_000979_250 Hb_003198_010 Hb_003198_010 Hb_008066_030--Hb_003198_010 Hb_008066_030--Hb_004567_020 Hb_001433_100 Hb_001433_100 Hb_008066_030--Hb_001433_100 Hb_000792_120 Hb_000792_120 Hb_008066_030--Hb_000792_120 Hb_000300_210 Hb_000300_210 Hb_008066_030--Hb_000300_210 Hb_098533_020 Hb_098533_020 Hb_000031_080--Hb_098533_020 Hb_000031_080--Hb_009778_040 Hb_002243_060 Hb_002243_060 Hb_000031_080--Hb_002243_060 Hb_000031_080--Hb_000809_060 Hb_000031_080--Hb_002081_030 Hb_000465_510 Hb_000465_510 Hb_000031_080--Hb_000465_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.98964 75.1859 26.2314 63.1782 7.82632 11.4256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
240.219 242.283 90.9297 14.4706 17.2821

CAGE analysis