Hb_001433_100

Information

Type -
Description -
Location Contig1433: 105187-108809
Sequence    

Annotation

kegg
ID rcu:RCOM_1433980
description ubiquitin-protein ligase, putative
nr
ID XP_012088967.1
description PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
swissprot
ID Q8RWU5
description F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1
trembl
ID A0A067JV68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23272 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11402: 106832-108041 , PASA_asmbl_11403: 106832-108492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001433_100 0.0 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
2 Hb_003226_240 0.1062591419 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
3 Hb_034482_040 0.1171594678 - - aspartate kinase, partial [Francisella tularensis]
4 Hb_000300_210 0.1221477176 - - gd2b, putative [Ricinus communis]
5 Hb_032202_250 0.1357306588 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
6 Hb_008066_030 0.1520426438 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
7 Hb_000329_660 0.1581408956 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
8 Hb_003060_040 0.1589066663 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
9 Hb_141194_010 0.1592307003 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
10 Hb_001186_070 0.1593314761 - - PREDICTED: F-box protein FBW2-like [Gossypium raimondii]
11 Hb_002989_040 0.1595252222 - - hypothetical protein 1 [Hevea brasiliensis]
12 Hb_023051_020 0.1664846378 - - -
13 Hb_000920_320 0.1717627504 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
14 Hb_012022_100 0.1733563602 - - CPRD49 family protein [Populus trichocarpa]
15 Hb_001143_070 0.1755313529 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
16 Hb_000258_180 0.1771688492 - - PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]
17 Hb_001425_070 0.1800302268 - - -
18 Hb_000792_120 0.1821349374 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
19 Hb_002478_020 0.1839002064 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
20 Hb_001373_100 0.1847757783 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001433_100 Hb_001433_100 Hb_003226_240 Hb_003226_240 Hb_001433_100--Hb_003226_240 Hb_034482_040 Hb_034482_040 Hb_001433_100--Hb_034482_040 Hb_000300_210 Hb_000300_210 Hb_001433_100--Hb_000300_210 Hb_032202_250 Hb_032202_250 Hb_001433_100--Hb_032202_250 Hb_008066_030 Hb_008066_030 Hb_001433_100--Hb_008066_030 Hb_000329_660 Hb_000329_660 Hb_001433_100--Hb_000329_660 Hb_002989_040 Hb_002989_040 Hb_003226_240--Hb_002989_040 Hb_003226_240--Hb_034482_040 Hb_023051_020 Hb_023051_020 Hb_003226_240--Hb_023051_020 Hb_000920_320 Hb_000920_320 Hb_003226_240--Hb_000920_320 Hb_003226_240--Hb_032202_250 Hb_034482_040--Hb_002989_040 Hb_034482_040--Hb_023051_020 Hb_034482_040--Hb_032202_250 Hb_141194_010 Hb_141194_010 Hb_034482_040--Hb_141194_010 Hb_000300_210--Hb_032202_250 Hb_000300_210--Hb_003226_240 Hb_001425_110 Hb_001425_110 Hb_000300_210--Hb_001425_110 Hb_000792_120 Hb_000792_120 Hb_000300_210--Hb_000792_120 Hb_000300_210--Hb_000329_660 Hb_001842_080 Hb_001842_080 Hb_032202_250--Hb_001842_080 Hb_032202_250--Hb_002989_040 Hb_000979_250 Hb_000979_250 Hb_008066_030--Hb_000979_250 Hb_003198_010 Hb_003198_010 Hb_008066_030--Hb_003198_010 Hb_004567_020 Hb_004567_020 Hb_008066_030--Hb_004567_020 Hb_008066_030--Hb_000792_120 Hb_008066_030--Hb_000300_210 Hb_003211_050 Hb_003211_050 Hb_000329_660--Hb_003211_050 Hb_001373_100 Hb_001373_100 Hb_000329_660--Hb_001373_100 Hb_000387_060 Hb_000387_060 Hb_000329_660--Hb_000387_060 Hb_000329_660--Hb_003226_240 Hb_001276_060 Hb_001276_060 Hb_000329_660--Hb_001276_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.587694 0.931794 0.728349 0.544314 0.185993 0.0552657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5232 29.4047 7.24379 0.732006 0.100103

CAGE analysis