Hb_000329_660

Information

Type -
Description -
Location Contig329: 492433-495158
Sequence    

Annotation

kegg
ID rcu:RCOM_1609330
description 9-cis-epoxycarotenoid dioxygenase, putative
nr
ID XP_012083689.1
description PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
swissprot
ID Q7XJM2
description Carotenoid cleavage dioxygenase 7, chloroplastic OS=Arabidopsis thaliana GN=CCD7 PE=1 SV=1
trembl
ID A0A067K1E0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14619 PE=4 SV=1
Gene Ontology
ID GO:0016702
description carotenoid cleavage dioxygenase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_660 0.0 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
2 Hb_003211_050 0.1392212543 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
3 Hb_001373_100 0.1457757051 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000387_060 0.1491333295 - - -
5 Hb_000300_210 0.1566421817 - - gd2b, putative [Ricinus communis]
6 Hb_003226_240 0.15700735 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
7 Hb_001276_060 0.1570174521 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
8 Hb_000032_350 0.158089934 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001433_100 0.1581408956 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
10 Hb_001922_080 0.1600836677 - - Tellurite resistance protein tehA, putative [Ricinus communis]
11 Hb_003095_070 0.1605307987 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
12 Hb_000792_120 0.1606299333 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
13 Hb_001842_080 0.1619485885 - - -
14 Hb_012022_100 0.1622346489 - - CPRD49 family protein [Populus trichocarpa]
15 Hb_001425_110 0.1637771639 - - hypothetical protein Csa_6G106200 [Cucumis sativus]
16 Hb_010172_100 0.1664435042 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
17 Hb_003376_210 0.1706822799 - - -
18 Hb_003592_070 0.171343299 - - -
19 Hb_000613_160 0.1733030392 - - coated vesicle membrane protein, putative [Ricinus communis]
20 Hb_004129_150 0.1733533921 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]

Gene co-expression network

sample Hb_000329_660 Hb_000329_660 Hb_003211_050 Hb_003211_050 Hb_000329_660--Hb_003211_050 Hb_001373_100 Hb_001373_100 Hb_000329_660--Hb_001373_100 Hb_000387_060 Hb_000387_060 Hb_000329_660--Hb_000387_060 Hb_000300_210 Hb_000300_210 Hb_000329_660--Hb_000300_210 Hb_003226_240 Hb_003226_240 Hb_000329_660--Hb_003226_240 Hb_001276_060 Hb_001276_060 Hb_000329_660--Hb_001276_060 Hb_003211_050--Hb_001276_060 Hb_003050_070 Hb_003050_070 Hb_003211_050--Hb_003050_070 Hb_011671_400 Hb_011671_400 Hb_003211_050--Hb_011671_400 Hb_072912_020 Hb_072912_020 Hb_003211_050--Hb_072912_020 Hb_000714_010 Hb_000714_010 Hb_003211_050--Hb_000714_010 Hb_003095_070 Hb_003095_070 Hb_003211_050--Hb_003095_070 Hb_001373_100--Hb_003226_240 Hb_001842_080 Hb_001842_080 Hb_001373_100--Hb_001842_080 Hb_000613_160 Hb_000613_160 Hb_001373_100--Hb_000613_160 Hb_001373_100--Hb_003095_070 Hb_012022_100 Hb_012022_100 Hb_001373_100--Hb_012022_100 Hb_000387_060--Hb_003211_050 Hb_032660_020 Hb_032660_020 Hb_000387_060--Hb_032660_020 Hb_000387_060--Hb_000714_010 Hb_001425_110 Hb_001425_110 Hb_000387_060--Hb_001425_110 Hb_000792_120 Hb_000792_120 Hb_000387_060--Hb_000792_120 Hb_001433_100 Hb_001433_100 Hb_000300_210--Hb_001433_100 Hb_032202_250 Hb_032202_250 Hb_000300_210--Hb_032202_250 Hb_000300_210--Hb_003226_240 Hb_000300_210--Hb_001425_110 Hb_000300_210--Hb_000792_120 Hb_002989_040 Hb_002989_040 Hb_003226_240--Hb_002989_040 Hb_003226_240--Hb_001433_100 Hb_034482_040 Hb_034482_040 Hb_003226_240--Hb_034482_040 Hb_023051_020 Hb_023051_020 Hb_003226_240--Hb_023051_020 Hb_000920_320 Hb_000920_320 Hb_003226_240--Hb_000920_320 Hb_003226_240--Hb_032202_250 Hb_001276_060--Hb_003095_070 Hb_001276_060--Hb_011671_400 Hb_005000_160 Hb_005000_160 Hb_001276_060--Hb_005000_160 Hb_000788_080 Hb_000788_080 Hb_001276_060--Hb_000788_080 Hb_009838_040 Hb_009838_040 Hb_001276_060--Hb_009838_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.593604 0.220479 0.0331508 0.0737018 0.0899215 0.133736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.53938 5.19076 1.54225 0.158366 0.0399655

CAGE analysis