Hb_003226_240

Information

Type -
Description -
Location Contig3226: 177598-181947
Sequence    

Annotation

kegg
ID rcu:RCOM_1178320
description Monoglyceride lipase, putative (EC:3.1.1.23)
nr
ID XP_012082772.1
description PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
swissprot
ID Q9C942
description Caffeoylshikimate esterase OS=Arabidopsis thaliana GN=CSE PE=1 SV=1
trembl
ID A0A067K7D3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13936 PE=4 SV=1
Gene Ontology
ID GO:0047372
description caffeoylshikimate esterase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34191: 177851-181693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_240 0.0 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
2 Hb_002989_040 0.1005207247 - - hypothetical protein 1 [Hevea brasiliensis]
3 Hb_001433_100 0.1062591419 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
4 Hb_034482_040 0.1124343698 - - aspartate kinase, partial [Francisella tularensis]
5 Hb_023051_020 0.1159507025 - - -
6 Hb_000920_320 0.1248101063 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
7 Hb_032202_250 0.1315722629 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
8 Hb_000300_210 0.1363481802 - - gd2b, putative [Ricinus communis]
9 Hb_012022_100 0.1444020362 - - CPRD49 family protein [Populus trichocarpa]
10 Hb_001425_070 0.1490027691 - - -
11 Hb_001143_070 0.1496923468 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
12 Hb_001373_100 0.1502248067 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003913_050 0.1526108781 - - 60S ribosomal protein L27B [Hevea brasiliensis]
14 Hb_141194_010 0.1531146816 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
15 Hb_000329_660 0.15700735 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
16 Hb_003060_040 0.161369143 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
17 Hb_001842_080 0.1680514094 - - -
18 Hb_000792_120 0.1702264422 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
19 Hb_000103_550 0.1715377003 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
20 Hb_002478_020 0.1718998439 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]

Gene co-expression network

sample Hb_003226_240 Hb_003226_240 Hb_002989_040 Hb_002989_040 Hb_003226_240--Hb_002989_040 Hb_001433_100 Hb_001433_100 Hb_003226_240--Hb_001433_100 Hb_034482_040 Hb_034482_040 Hb_003226_240--Hb_034482_040 Hb_023051_020 Hb_023051_020 Hb_003226_240--Hb_023051_020 Hb_000920_320 Hb_000920_320 Hb_003226_240--Hb_000920_320 Hb_032202_250 Hb_032202_250 Hb_003226_240--Hb_032202_250 Hb_002989_040--Hb_023051_020 Hb_002989_040--Hb_034482_040 Hb_001143_070 Hb_001143_070 Hb_002989_040--Hb_001143_070 Hb_000103_030 Hb_000103_030 Hb_002989_040--Hb_000103_030 Hb_002989_040--Hb_000920_320 Hb_001433_100--Hb_034482_040 Hb_000300_210 Hb_000300_210 Hb_001433_100--Hb_000300_210 Hb_001433_100--Hb_032202_250 Hb_008066_030 Hb_008066_030 Hb_001433_100--Hb_008066_030 Hb_000329_660 Hb_000329_660 Hb_001433_100--Hb_000329_660 Hb_034482_040--Hb_023051_020 Hb_034482_040--Hb_032202_250 Hb_141194_010 Hb_141194_010 Hb_034482_040--Hb_141194_010 Hb_113635_010 Hb_113635_010 Hb_023051_020--Hb_113635_010 Hb_001425_070 Hb_001425_070 Hb_023051_020--Hb_001425_070 Hb_091433_030 Hb_091433_030 Hb_023051_020--Hb_091433_030 Hb_003913_050 Hb_003913_050 Hb_000920_320--Hb_003913_050 Hb_001396_090 Hb_001396_090 Hb_000920_320--Hb_001396_090 Hb_003060_040 Hb_003060_040 Hb_000920_320--Hb_003060_040 Hb_000270_620 Hb_000270_620 Hb_000920_320--Hb_000270_620 Hb_001842_080 Hb_001842_080 Hb_032202_250--Hb_001842_080 Hb_032202_250--Hb_000300_210 Hb_032202_250--Hb_002989_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95582 0.518447 0.622046 0.713984 0.879302 0.389085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.2809 80.6276 22.9971 5.42394 0.498722

CAGE analysis