Hb_003913_050

Information

Type -
Description -
Location Contig3913: 34577-35017
Sequence    

Annotation

kegg
ID csv:101228988
description 60S ribosomal protein L27a-3-like
nr
ID ADR71245.1
description 60S ribosomal protein L27B [Hevea brasiliensis]
swissprot
ID P49637
description 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2
trembl
ID I3NMK8
description 60S ribosomal protein L27B OS=Hevea brasiliensis GN=RPL27B PE=2 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l27a-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39202: 34461-35166
cDNA
(Sanger)
(ID:Location)		 037_C12.ab1: 34461-35166

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003913_050 0.0 - - 60S ribosomal protein L27B [Hevea brasiliensis]
2 Hb_000920_320 0.1180997228 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
3 Hb_001396_090 0.1422456949 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
4 Hb_000103_550 0.1460439774 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
5 Hb_003226_240 0.1526108781 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
6 Hb_004159_050 0.1569995267 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000270_620 0.1570596059 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
8 Hb_002989_040 0.1600750519 - - hypothetical protein 1 [Hevea brasiliensis]
9 Hb_091433_030 0.1648729058 - - -
10 Hb_003060_040 0.1668592993 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
11 Hb_105602_020 0.1729416724 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
12 Hb_000592_060 0.174940505 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
13 Hb_183612_090 0.1793621061 - - -
14 Hb_001425_060 0.1796034806 - - conserved hypothetical protein [Ricinus communis]
15 Hb_141194_010 0.1855834473 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
16 Hb_006351_110 0.1875876503 - - -
17 Hb_001143_070 0.1890996414 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
18 Hb_000103_030 0.1962606244 - - hypothetical protein VITISV_021700 [Vitis vinifera]
19 Hb_023051_020 0.1990493632 - - -
20 Hb_001425_070 0.1992749793 - - -

Gene co-expression network

sample Hb_003913_050 Hb_003913_050 Hb_000920_320 Hb_000920_320 Hb_003913_050--Hb_000920_320 Hb_001396_090 Hb_001396_090 Hb_003913_050--Hb_001396_090 Hb_000103_550 Hb_000103_550 Hb_003913_050--Hb_000103_550 Hb_003226_240 Hb_003226_240 Hb_003913_050--Hb_003226_240 Hb_004159_050 Hb_004159_050 Hb_003913_050--Hb_004159_050 Hb_000270_620 Hb_000270_620 Hb_003913_050--Hb_000270_620 Hb_000920_320--Hb_001396_090 Hb_000920_320--Hb_003226_240 Hb_003060_040 Hb_003060_040 Hb_000920_320--Hb_003060_040 Hb_002989_040 Hb_002989_040 Hb_000920_320--Hb_002989_040 Hb_000920_320--Hb_000270_620 Hb_001396_090--Hb_000103_550 Hb_001396_090--Hb_000270_620 Hb_061383_010 Hb_061383_010 Hb_001396_090--Hb_061383_010 Hb_001776_170 Hb_001776_170 Hb_001396_090--Hb_001776_170 Hb_000103_550--Hb_000270_620 Hb_000318_490 Hb_000318_490 Hb_000103_550--Hb_000318_490 Hb_001159_200 Hb_001159_200 Hb_000103_550--Hb_001159_200 Hb_003095_070 Hb_003095_070 Hb_000103_550--Hb_003095_070 Hb_006351_110 Hb_006351_110 Hb_000103_550--Hb_006351_110 Hb_003226_240--Hb_002989_040 Hb_001433_100 Hb_001433_100 Hb_003226_240--Hb_001433_100 Hb_034482_040 Hb_034482_040 Hb_003226_240--Hb_034482_040 Hb_023051_020 Hb_023051_020 Hb_003226_240--Hb_023051_020 Hb_032202_250 Hb_032202_250 Hb_003226_240--Hb_032202_250 Hb_004159_050--Hb_006351_110 Hb_004159_050--Hb_000270_620 Hb_183612_080 Hb_183612_080 Hb_004159_050--Hb_183612_080 Hb_004159_050--Hb_000103_550 Hb_004159_050--Hb_000920_320 Hb_000617_110 Hb_000617_110 Hb_004159_050--Hb_000617_110 Hb_000123_160 Hb_000123_160 Hb_000270_620--Hb_000123_160 Hb_000270_620--Hb_000318_490 Hb_004545_130 Hb_004545_130 Hb_000270_620--Hb_004545_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.38755 1.04714 0.227435 0.422224 1.40686 14.5443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
100.317 271.538 99.9909 40.0044 5.91771

CAGE analysis