Hb_004159_050

Information

Type -
Description -
Location Contig4159: 117746-118048
Sequence    

Annotation

kegg
ID rcu:RCOM_0211550
description hypothetical protein
nr
ID XP_002533352.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T533
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0211550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41134: 117559-118021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004159_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006351_110 0.109514787 - - -
3 Hb_000270_620 0.1453041156 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
4 Hb_183612_080 0.1486941135 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
5 Hb_000103_550 0.1493606912 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
6 Hb_000920_320 0.1525504836 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
7 Hb_000617_110 0.1543353326 - - translationally controlled tumor protein [Hevea brasiliensis]
8 Hb_004474_010 0.155853538 - - unnamed protein product [Coffea canephora]
9 Hb_003913_050 0.1569995267 - - 60S ribosomal protein L27B [Hevea brasiliensis]
10 Hb_010172_100 0.1578679023 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
11 Hb_000819_070 0.1687040843 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
12 Hb_001842_080 0.1697347257 - - -
13 Hb_004223_260 0.1712723779 - - hypothetical protein F383_09277 [Gossypium arboreum]
14 Hb_000318_490 0.172560907 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
15 Hb_004635_060 0.1729159758 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
16 Hb_000431_160 0.1730290653 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
17 Hb_030565_040 0.1742486597 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
18 Hb_000316_100 0.1756247918 - - protein with unknown function [Ricinus communis]
19 Hb_000592_060 0.1769251928 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
20 Hb_091433_030 0.1793611403 - - -

Gene co-expression network

sample Hb_004159_050 Hb_004159_050 Hb_006351_110 Hb_006351_110 Hb_004159_050--Hb_006351_110 Hb_000270_620 Hb_000270_620 Hb_004159_050--Hb_000270_620 Hb_183612_080 Hb_183612_080 Hb_004159_050--Hb_183612_080 Hb_000103_550 Hb_000103_550 Hb_004159_050--Hb_000103_550 Hb_000920_320 Hb_000920_320 Hb_004159_050--Hb_000920_320 Hb_000617_110 Hb_000617_110 Hb_004159_050--Hb_000617_110 Hb_010172_100 Hb_010172_100 Hb_006351_110--Hb_010172_100 Hb_001102_250 Hb_001102_250 Hb_006351_110--Hb_001102_250 Hb_006351_110--Hb_000103_550 Hb_000316_100 Hb_000316_100 Hb_006351_110--Hb_000316_100 Hb_010594_030 Hb_010594_030 Hb_006351_110--Hb_010594_030 Hb_000270_620--Hb_000103_550 Hb_000123_160 Hb_000123_160 Hb_000270_620--Hb_000123_160 Hb_000318_490 Hb_000318_490 Hb_000270_620--Hb_000318_490 Hb_000270_620--Hb_000920_320 Hb_004545_130 Hb_004545_130 Hb_000270_620--Hb_004545_130 Hb_183612_080--Hb_000617_110 Hb_000270_730 Hb_000270_730 Hb_183612_080--Hb_000270_730 Hb_001842_120 Hb_001842_120 Hb_183612_080--Hb_001842_120 Hb_001842_080 Hb_001842_080 Hb_183612_080--Hb_001842_080 Hb_000613_170 Hb_000613_170 Hb_183612_080--Hb_000613_170 Hb_000103_550--Hb_000318_490 Hb_001159_200 Hb_001159_200 Hb_000103_550--Hb_001159_200 Hb_003095_070 Hb_003095_070 Hb_000103_550--Hb_003095_070 Hb_001396_090 Hb_001396_090 Hb_000103_550--Hb_001396_090 Hb_003913_050 Hb_003913_050 Hb_000920_320--Hb_003913_050 Hb_000920_320--Hb_001396_090 Hb_003226_240 Hb_003226_240 Hb_000920_320--Hb_003226_240 Hb_003060_040 Hb_003060_040 Hb_000920_320--Hb_003060_040 Hb_002989_040 Hb_002989_040 Hb_000920_320--Hb_002989_040 Hb_000431_160 Hb_000431_160 Hb_000617_110--Hb_000431_160 Hb_000617_110--Hb_004545_130 Hb_000819_070 Hb_000819_070 Hb_000617_110--Hb_000819_070 Hb_044653_060 Hb_044653_060 Hb_000617_110--Hb_044653_060 Hb_000879_210 Hb_000879_210 Hb_000617_110--Hb_000879_210 Hb_000635_080 Hb_000635_080 Hb_000617_110--Hb_000635_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.65759 0 0 3.04904 1.6152 15.4315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.0141 117.298 32.8762 9.32747 0.446463

CAGE analysis