Hb_000879_210

Information

Type -
Description -
Location Contig879: 232094-236420
Sequence    

Annotation

kegg
ID pop:POPTR_0014s01620g
description POPTRDRAFT_823869; hypothetical protein
nr
ID XP_002320029.1
description hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IBR2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s01620g PE=4 SV=1
Gene Ontology
ID GO:0006661
description hypothetical protein POPTR_0014s01620g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61362: 232089-236133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_210 0.0 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
2 Hb_000431_160 0.1010711353 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
3 Hb_000617_110 0.1107156458 - - translationally controlled tumor protein [Hevea brasiliensis]
4 Hb_044653_060 0.1254801639 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
5 Hb_004545_130 0.1309007602 - - uncharacterized protein LOC100305465 [Glycine max]
6 Hb_000819_070 0.1371640087 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
7 Hb_008748_020 0.1392870417 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
8 Hb_004429_110 0.1440719951 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
9 Hb_004735_050 0.1498592341 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
10 Hb_001377_380 0.153721681 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
11 Hb_004223_260 0.1540915603 - - hypothetical protein F383_09277 [Gossypium arboreum]
12 Hb_000592_060 0.1552284311 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
13 Hb_000635_080 0.1588497819 - - 60S ribosomal protein L17A [Hevea brasiliensis]
14 Hb_002316_120 0.1602390121 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
15 Hb_001369_400 0.1622977653 - - PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
16 Hb_006541_020 0.1627335981 - - unknown [Lotus japonicus]
17 Hb_000025_240 0.1629732741 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
18 Hb_006718_010 0.1640541675 - - PREDICTED: histone H2AX-like [Elaeis guineensis]
19 Hb_103118_020 0.1645866138 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
20 Hb_000270_720 0.1656494003 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]

Gene co-expression network

sample Hb_000879_210 Hb_000879_210 Hb_000431_160 Hb_000431_160 Hb_000879_210--Hb_000431_160 Hb_000617_110 Hb_000617_110 Hb_000879_210--Hb_000617_110 Hb_044653_060 Hb_044653_060 Hb_000879_210--Hb_044653_060 Hb_004545_130 Hb_004545_130 Hb_000879_210--Hb_004545_130 Hb_000819_070 Hb_000819_070 Hb_000879_210--Hb_000819_070 Hb_008748_020 Hb_008748_020 Hb_000879_210--Hb_008748_020 Hb_000431_160--Hb_000617_110 Hb_000431_160--Hb_044653_060 Hb_000431_160--Hb_004545_130 Hb_004735_050 Hb_004735_050 Hb_000431_160--Hb_004735_050 Hb_000431_160--Hb_000819_070 Hb_000617_110--Hb_004545_130 Hb_000617_110--Hb_000819_070 Hb_000617_110--Hb_044653_060 Hb_000635_080 Hb_000635_080 Hb_000617_110--Hb_000635_080 Hb_001266_030 Hb_001266_030 Hb_044653_060--Hb_001266_030 Hb_000045_210 Hb_000045_210 Hb_044653_060--Hb_000045_210 Hb_044653_060--Hb_004545_130 Hb_004545_130--Hb_000635_080 Hb_001377_380 Hb_001377_380 Hb_004545_130--Hb_001377_380 Hb_004545_130--Hb_004735_050 Hb_004209_030 Hb_004209_030 Hb_004545_130--Hb_004209_030 Hb_004223_260 Hb_004223_260 Hb_000819_070--Hb_004223_260 Hb_001369_400 Hb_001369_400 Hb_000819_070--Hb_001369_400 Hb_003349_070 Hb_003349_070 Hb_000819_070--Hb_003349_070 Hb_000780_210 Hb_000780_210 Hb_000819_070--Hb_000780_210 Hb_000819_070--Hb_000635_080 Hb_005914_200 Hb_005914_200 Hb_008748_020--Hb_005914_200 Hb_008748_020--Hb_004735_050 Hb_000025_240 Hb_000025_240 Hb_008748_020--Hb_000025_240 Hb_004754_070 Hb_004754_070 Hb_008748_020--Hb_004754_070 Hb_006541_020 Hb_006541_020 Hb_008748_020--Hb_006541_020 Hb_004007_180 Hb_004007_180 Hb_008748_020--Hb_004007_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31986 0.0699133 0.192659 4.26729 0.46894 2.90102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6272 29.1375 6.23732 3.10558 2.37271

CAGE analysis