Hb_001266_030

Information

Type -
Description -
Location Contig1266: 33233-35601
Sequence    

Annotation

kegg
ID rcu:RCOM_0535030
description hypothetical protein
nr
ID XP_012092699.1
description PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
swissprot
ID Q6NQL6
description Lipid phosphate phosphatase epsilon 2, chloroplastic OS=Arabidopsis thaliana GN=LPPE2 PE=1 SV=1
trembl
ID A0A067L841
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22169 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08019: 33369-35585 , PASA_asmbl_08020: 33582-35585
cDNA
(Sanger)
(ID:Location)		 018_A08.ab1: 33582-35585

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001266_030 0.0 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
2 Hb_044653_060 0.0941008626 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
3 Hb_012053_010 0.120783975 - - srpk, putative [Ricinus communis]
4 Hb_000045_210 0.1331068793 - - -
5 Hb_027892_040 0.1345136682 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
6 Hb_000431_160 0.1347055045 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
7 Hb_000617_110 0.1435690051 - - translationally controlled tumor protein [Hevea brasiliensis]
8 Hb_086692_020 0.1526236807 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
9 Hb_004735_050 0.1527255662 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
10 Hb_000258_280 0.1538845396 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
11 Hb_001449_090 0.15764071 - - PREDICTED: NHL repeat-containing protein 2 isoform X2 [Jatropha curcas]
12 Hb_002344_070 0.1597942334 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
13 Hb_001307_210 0.1612488423 - - Os02g0814700 [Oryza sativa Japonica Group]
14 Hb_000110_170 0.1622273061 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_003540_200 0.1626879214 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
16 Hb_000878_020 0.164320725 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
17 Hb_043623_010 0.1676524438 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
18 Hb_002105_030 0.168189173 - - -
19 Hb_004545_130 0.1682348688 - - uncharacterized protein LOC100305465 [Glycine max]
20 Hb_006588_080 0.1717220428 - - hypothetical protein JCGZ_25746 [Jatropha curcas]

Gene co-expression network

sample Hb_001266_030 Hb_001266_030 Hb_044653_060 Hb_044653_060 Hb_001266_030--Hb_044653_060 Hb_012053_010 Hb_012053_010 Hb_001266_030--Hb_012053_010 Hb_000045_210 Hb_000045_210 Hb_001266_030--Hb_000045_210 Hb_027892_040 Hb_027892_040 Hb_001266_030--Hb_027892_040 Hb_000431_160 Hb_000431_160 Hb_001266_030--Hb_000431_160 Hb_000617_110 Hb_000617_110 Hb_001266_030--Hb_000617_110 Hb_044653_060--Hb_000431_160 Hb_044653_060--Hb_000617_110 Hb_044653_060--Hb_000045_210 Hb_000879_210 Hb_000879_210 Hb_044653_060--Hb_000879_210 Hb_004545_130 Hb_004545_130 Hb_044653_060--Hb_004545_130 Hb_002105_030 Hb_002105_030 Hb_012053_010--Hb_002105_030 Hb_002344_070 Hb_002344_070 Hb_012053_010--Hb_002344_070 Hb_000878_020 Hb_000878_020 Hb_012053_010--Hb_000878_020 Hb_003540_200 Hb_003540_200 Hb_012053_010--Hb_003540_200 Hb_000110_170 Hb_000110_170 Hb_012053_010--Hb_000110_170 Hb_141194_010 Hb_141194_010 Hb_000045_210--Hb_141194_010 Hb_000045_210--Hb_027892_040 Hb_000045_210--Hb_012053_010 Hb_000045_210--Hb_000431_160 Hb_027892_040--Hb_012053_010 Hb_027892_040--Hb_044653_060 Hb_027892_040--Hb_000431_160 Hb_000316_100 Hb_000316_100 Hb_027892_040--Hb_000316_100 Hb_000431_160--Hb_000617_110 Hb_000431_160--Hb_004545_130 Hb_000431_160--Hb_000879_210 Hb_004735_050 Hb_004735_050 Hb_000431_160--Hb_004735_050 Hb_000819_070 Hb_000819_070 Hb_000431_160--Hb_000819_070 Hb_000617_110--Hb_004545_130 Hb_000617_110--Hb_000819_070 Hb_000617_110--Hb_000879_210 Hb_000635_080 Hb_000635_080 Hb_000617_110--Hb_000635_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.86406 2.18744 5.34164 10.3471 4.52232 5.27825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.1794 146.578 20.1956 13.867 4.97319

CAGE analysis