Hb_044653_060

Information

Type -
Description -
Location Contig44653: 55267-57381
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26940g
description POPTRDRAFT_829661; hypothetical protein
nr
ID XP_012065619.1
description PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LG96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16872 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43068: 55280-57385 , PASA_asmbl_43070: 56752-56993
cDNA
(Sanger)
(ID:Location)		 019_F06.ab1: 55310-57385

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044653_060 0.0 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
2 Hb_000431_160 0.0753166663 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
3 Hb_001266_030 0.0941008626 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
4 Hb_000617_110 0.1061330541 - - translationally controlled tumor protein [Hevea brasiliensis]
5 Hb_000045_210 0.12204481 - - -
6 Hb_000879_210 0.1254801639 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
7 Hb_004545_130 0.1293798853 - - uncharacterized protein LOC100305465 [Glycine max]
8 Hb_012053_010 0.1309706381 - - srpk, putative [Ricinus communis]
9 Hb_001307_210 0.1331628233 - - Os02g0814700 [Oryza sativa Japonica Group]
10 Hb_027892_040 0.1352723546 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
11 Hb_000110_170 0.1432226187 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_004735_050 0.144525397 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
13 Hb_001449_090 0.1497489394 - - PREDICTED: NHL repeat-containing protein 2 isoform X2 [Jatropha curcas]
14 Hb_006588_080 0.1557260532 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
15 Hb_000878_020 0.1558632486 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
16 Hb_002105_030 0.1587491834 - - -
17 Hb_008748_020 0.1610565541 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
18 Hb_001386_050 0.16126532 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
19 Hb_000454_180 0.1626455571 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
20 Hb_001863_420 0.1644174834 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]

Gene co-expression network

sample Hb_044653_060 Hb_044653_060 Hb_000431_160 Hb_000431_160 Hb_044653_060--Hb_000431_160 Hb_001266_030 Hb_001266_030 Hb_044653_060--Hb_001266_030 Hb_000617_110 Hb_000617_110 Hb_044653_060--Hb_000617_110 Hb_000045_210 Hb_000045_210 Hb_044653_060--Hb_000045_210 Hb_000879_210 Hb_000879_210 Hb_044653_060--Hb_000879_210 Hb_004545_130 Hb_004545_130 Hb_044653_060--Hb_004545_130 Hb_000431_160--Hb_000617_110 Hb_000431_160--Hb_004545_130 Hb_000431_160--Hb_000879_210 Hb_004735_050 Hb_004735_050 Hb_000431_160--Hb_004735_050 Hb_000819_070 Hb_000819_070 Hb_000431_160--Hb_000819_070 Hb_012053_010 Hb_012053_010 Hb_001266_030--Hb_012053_010 Hb_001266_030--Hb_000045_210 Hb_027892_040 Hb_027892_040 Hb_001266_030--Hb_027892_040 Hb_001266_030--Hb_000431_160 Hb_001266_030--Hb_000617_110 Hb_000617_110--Hb_004545_130 Hb_000617_110--Hb_000819_070 Hb_000617_110--Hb_000879_210 Hb_000635_080 Hb_000635_080 Hb_000617_110--Hb_000635_080 Hb_141194_010 Hb_141194_010 Hb_000045_210--Hb_141194_010 Hb_000045_210--Hb_027892_040 Hb_000045_210--Hb_012053_010 Hb_000045_210--Hb_000431_160 Hb_000879_210--Hb_004545_130 Hb_000879_210--Hb_000819_070 Hb_008748_020 Hb_008748_020 Hb_000879_210--Hb_008748_020 Hb_004545_130--Hb_000635_080 Hb_001377_380 Hb_001377_380 Hb_004545_130--Hb_001377_380 Hb_004545_130--Hb_004735_050 Hb_004209_030 Hb_004209_030 Hb_004545_130--Hb_004209_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6915 2.24435 23.4583 46.6871 13.8407 33.2
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
175.782 623.231 121.835 56.5391 43.3807

CAGE analysis