Hb_061383_010

Information

Type -
Description -
Location Contig61383: 5576-6574
Sequence    

Annotation

kegg
ID vvi:100232986
description class I beta-1,3-glucanase
nr
ID AEV41413.1
description beta-1,3-glucanase [Hevea brasiliensis]
swissprot
ID P52407
description Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2
trembl
ID G9G7S0
description Beta-1,3-glucanase OS=Hevea brasiliensis GN=Gln4 PE=3 SV=1
Gene Ontology
ID GO:0005618
description beta- -glucanase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061383_010 0.0 - - beta-1,3-glucanase [Hevea brasiliensis]
2 Hb_012305_020 0.0914366961 - - beta-1,3-glucanase [Hevea brasiliensis]
3 Hb_086692_020 0.144493189 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
4 Hb_002150_050 0.1606890214 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001396_090 0.1640512477 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
6 Hb_038134_010 0.1746553087 - - -
7 Hb_183612_090 0.1767573761 - - -
8 Hb_001085_180 0.1833506644 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010589_050 0.1931969837 - - -
10 Hb_000352_180 0.1988919213 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000045_210 0.2001401669 - - -
12 Hb_003913_050 0.2092353901 - - 60S ribosomal protein L27B [Hevea brasiliensis]
13 Hb_002588_040 0.2114041121 - - Pathogenesis-related protein 1 [Theobroma cacao]
14 Hb_000352_160 0.2209514176 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000103_550 0.2221350488 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
16 Hb_000920_320 0.2243155352 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
17 Hb_089100_050 0.2252891156 - - -
18 Hb_058143_010 0.2255620625 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
19 Hb_003398_140 0.2259749109 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_027892_040 0.226475163 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]

Gene co-expression network

sample Hb_061383_010 Hb_061383_010 Hb_012305_020 Hb_012305_020 Hb_061383_010--Hb_012305_020 Hb_086692_020 Hb_086692_020 Hb_061383_010--Hb_086692_020 Hb_002150_050 Hb_002150_050 Hb_061383_010--Hb_002150_050 Hb_001396_090 Hb_001396_090 Hb_061383_010--Hb_001396_090 Hb_038134_010 Hb_038134_010 Hb_061383_010--Hb_038134_010 Hb_183612_090 Hb_183612_090 Hb_061383_010--Hb_183612_090 Hb_001085_180 Hb_001085_180 Hb_012305_020--Hb_001085_180 Hb_012305_020--Hb_086692_020 Hb_012305_020--Hb_183612_090 Hb_001266_030 Hb_001266_030 Hb_012305_020--Hb_001266_030 Hb_000062_300 Hb_000062_300 Hb_012305_020--Hb_000062_300 Hb_003398_140 Hb_003398_140 Hb_086692_020--Hb_003398_140 Hb_086692_020--Hb_001266_030 Hb_012053_010 Hb_012053_010 Hb_086692_020--Hb_012053_010 Hb_086692_020--Hb_001396_090 Hb_027337_120 Hb_027337_120 Hb_002150_050--Hb_027337_120 Hb_001247_330 Hb_001247_330 Hb_002150_050--Hb_001247_330 Hb_001214_080 Hb_001214_080 Hb_002150_050--Hb_001214_080 Hb_000563_260 Hb_000563_260 Hb_002150_050--Hb_000563_260 Hb_001146_060 Hb_001146_060 Hb_002150_050--Hb_001146_060 Hb_000920_320 Hb_000920_320 Hb_001396_090--Hb_000920_320 Hb_000103_550 Hb_000103_550 Hb_001396_090--Hb_000103_550 Hb_003913_050 Hb_003913_050 Hb_001396_090--Hb_003913_050 Hb_000270_620 Hb_000270_620 Hb_001396_090--Hb_000270_620 Hb_001776_170 Hb_001776_170 Hb_001396_090--Hb_001776_170 Hb_089100_050 Hb_089100_050 Hb_038134_010--Hb_089100_050 Hb_038134_010--Hb_001396_090 Hb_038134_010--Hb_012305_020 Hb_105602_020 Hb_105602_020 Hb_038134_010--Hb_105602_020 Hb_000594_090 Hb_000594_090 Hb_038134_010--Hb_000594_090 Hb_183612_090--Hb_001085_180 Hb_003060_040 Hb_003060_040 Hb_183612_090--Hb_003060_040 Hb_183612_090--Hb_003913_050 Hb_091433_030 Hb_091433_030 Hb_183612_090--Hb_091433_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.096668 0 0.017039 0.595932 1.11379 1.24353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.02202 33.3156 8.8871 3.9902 0.334785

CAGE analysis