Hb_091433_030

Information

Type -
Description -
Location Contig91433: 28190-29076
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62200: 16800-27838
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_091433_030 0.0 - - -
2 Hb_001425_060 0.0700268792 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001425_070 0.114152497 - - -
4 Hb_003060_040 0.154694388 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
5 Hb_002989_040 0.1548355906 - - hypothetical protein 1 [Hevea brasiliensis]
6 Hb_023051_020 0.1557837308 - - -
7 Hb_000103_030 0.1625334746 - - hypothetical protein VITISV_021700 [Vitis vinifera]
8 Hb_003913_050 0.1648729058 - - 60S ribosomal protein L27B [Hevea brasiliensis]
9 Hb_034482_040 0.1652600639 - - aspartate kinase, partial [Francisella tularensis]
10 Hb_003226_240 0.1720509331 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
11 Hb_004159_050 0.1793611403 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000920_320 0.1796562832 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
13 Hb_183612_090 0.181020282 - - -
14 Hb_001143_070 0.1875411803 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
15 Hb_032202_250 0.1919572915 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
16 Hb_004461_020 0.1928714557 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
17 Hb_001425_050 0.2009083063 - - -
18 Hb_000264_130 0.2031475685 - - PREDICTED: uncharacterized protein LOC103870402 [Brassica rapa]
19 Hb_105602_020 0.2090531619 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
20 Hb_001433_100 0.2117029214 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_091433_030 Hb_091433_030 Hb_001425_060 Hb_001425_060 Hb_091433_030--Hb_001425_060 Hb_001425_070 Hb_001425_070 Hb_091433_030--Hb_001425_070 Hb_003060_040 Hb_003060_040 Hb_091433_030--Hb_003060_040 Hb_002989_040 Hb_002989_040 Hb_091433_030--Hb_002989_040 Hb_023051_020 Hb_023051_020 Hb_091433_030--Hb_023051_020 Hb_000103_030 Hb_000103_030 Hb_091433_030--Hb_000103_030 Hb_001425_060--Hb_001425_070 Hb_001425_050 Hb_001425_050 Hb_001425_060--Hb_001425_050 Hb_001425_060--Hb_000103_030 Hb_004461_020 Hb_004461_020 Hb_001425_060--Hb_004461_020 Hb_001425_060--Hb_003060_040 Hb_001425_070--Hb_004461_020 Hb_001143_070 Hb_001143_070 Hb_001425_070--Hb_001143_070 Hb_001425_070--Hb_000103_030 Hb_034482_040 Hb_034482_040 Hb_001425_070--Hb_034482_040 Hb_000920_320 Hb_000920_320 Hb_003060_040--Hb_000920_320 Hb_000270_620 Hb_000270_620 Hb_003060_040--Hb_000270_620 Hb_001433_100 Hb_001433_100 Hb_003060_040--Hb_001433_100 Hb_003226_240 Hb_003226_240 Hb_003060_040--Hb_003226_240 Hb_003913_050 Hb_003913_050 Hb_003060_040--Hb_003913_050 Hb_002989_040--Hb_023051_020 Hb_002989_040--Hb_003226_240 Hb_002989_040--Hb_034482_040 Hb_002989_040--Hb_001143_070 Hb_002989_040--Hb_000103_030 Hb_002989_040--Hb_000920_320 Hb_023051_020--Hb_003226_240 Hb_023051_020--Hb_034482_040 Hb_113635_010 Hb_113635_010 Hb_023051_020--Hb_113635_010 Hb_023051_020--Hb_001425_070 Hb_105602_020 Hb_105602_020 Hb_000103_030--Hb_105602_020 Hb_000103_030--Hb_001143_070 Hb_000103_030--Hb_004461_020 Hb_089100_050 Hb_089100_050 Hb_000103_030--Hb_089100_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.381028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.30825 6.72555 2.45576 0.261362 0

CAGE analysis