Hb_001425_060

Information

Type -
Description -
Location Contig1425: 103853-104161
Sequence    

Annotation

kegg
ID rcu:RCOM_1375660
description hypothetical protein
nr
ID XP_002523760.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCP1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1375660 PE=4 SV=1
Gene Ontology
ID GO:0005488
description duf4283 domain protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001425_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_091433_030 0.0700268792 - - -
3 Hb_001425_070 0.0966958418 - - -
4 Hb_001425_050 0.1404069938 - - -
5 Hb_000103_030 0.1485898119 - - hypothetical protein VITISV_021700 [Vitis vinifera]
6 Hb_004461_020 0.170143327 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
7 Hb_003060_040 0.1722109409 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
8 Hb_002989_040 0.1757374246 - - hypothetical protein 1 [Hevea brasiliensis]
9 Hb_023051_020 0.176385649 - - -
10 Hb_001258_140 0.1779723492 - - -
11 Hb_001143_070 0.1784045702 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
12 Hb_003913_050 0.1796034806 - - 60S ribosomal protein L27B [Hevea brasiliensis]
13 Hb_003226_240 0.189022367 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
14 Hb_034482_040 0.1945975295 - - aspartate kinase, partial [Francisella tularensis]
15 Hb_002326_170 0.1948055121 - - Protein Z, putative [Ricinus communis]
16 Hb_000920_320 0.1981709871 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
17 Hb_004159_050 0.2008412515 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001276_060 0.2030284438 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
19 Hb_000592_060 0.2062958847 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
20 Hb_105602_020 0.2087713192 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]

Gene co-expression network

sample Hb_001425_060 Hb_001425_060 Hb_091433_030 Hb_091433_030 Hb_001425_060--Hb_091433_030 Hb_001425_070 Hb_001425_070 Hb_001425_060--Hb_001425_070 Hb_001425_050 Hb_001425_050 Hb_001425_060--Hb_001425_050 Hb_000103_030 Hb_000103_030 Hb_001425_060--Hb_000103_030 Hb_004461_020 Hb_004461_020 Hb_001425_060--Hb_004461_020 Hb_003060_040 Hb_003060_040 Hb_001425_060--Hb_003060_040 Hb_091433_030--Hb_001425_070 Hb_091433_030--Hb_003060_040 Hb_002989_040 Hb_002989_040 Hb_091433_030--Hb_002989_040 Hb_023051_020 Hb_023051_020 Hb_091433_030--Hb_023051_020 Hb_091433_030--Hb_000103_030 Hb_001425_070--Hb_004461_020 Hb_001143_070 Hb_001143_070 Hb_001425_070--Hb_001143_070 Hb_001425_070--Hb_000103_030 Hb_034482_040 Hb_034482_040 Hb_001425_070--Hb_034482_040 Hb_002045_200 Hb_002045_200 Hb_001425_050--Hb_002045_200 Hb_001902_120 Hb_001902_120 Hb_001425_050--Hb_001902_120 Hb_052941_010 Hb_052941_010 Hb_001425_050--Hb_052941_010 Hb_005568_010 Hb_005568_010 Hb_001425_050--Hb_005568_010 Hb_002326_170 Hb_002326_170 Hb_001425_050--Hb_002326_170 Hb_105602_020 Hb_105602_020 Hb_000103_030--Hb_105602_020 Hb_000103_030--Hb_001143_070 Hb_000103_030--Hb_004461_020 Hb_000103_030--Hb_002989_040 Hb_089100_050 Hb_089100_050 Hb_000103_030--Hb_089100_050 Hb_004461_020--Hb_001143_070 Hb_004461_020--Hb_001425_050 Hb_002290_050 Hb_002290_050 Hb_004461_020--Hb_002290_050 Hb_000920_320 Hb_000920_320 Hb_003060_040--Hb_000920_320 Hb_000270_620 Hb_000270_620 Hb_003060_040--Hb_000270_620 Hb_001433_100 Hb_001433_100 Hb_003060_040--Hb_001433_100 Hb_003226_240 Hb_003226_240 Hb_003060_040--Hb_003226_240 Hb_003913_050 Hb_003913_050 Hb_003060_040--Hb_003913_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.277254 4.27142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.7385 71.7359 38.3435 2.78161 0

CAGE analysis