Hb_001902_120

Information

Type -
Description -
Location Contig1902: 70542-71096
Sequence    

Annotation

kegg
ID rcu:RCOM_1583280
description calmodulin-binding heat-shock protein, putative
nr
ID XP_012090237.1
description PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JEM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26093 PE=4 SV=1
Gene Ontology
ID GO:0016787
description lipase class 3 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001902_120 0.0 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
2 Hb_002045_200 0.0978655832 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
3 Hb_052941_010 0.1023938594 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
4 Hb_005568_010 0.1033965284 - - -
5 Hb_001425_050 0.1349153999 - - -
6 Hb_179520_010 0.1514884733 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
7 Hb_010174_070 0.1529557211 - - -
8 Hb_003913_140 0.1637326614 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
9 Hb_108528_010 0.1640057138 - - unnamed protein product [Coffea canephora]
10 Hb_000042_240 0.1803054409 - - -
11 Hb_002326_170 0.1831729093 - - Protein Z, putative [Ricinus communis]
12 Hb_001741_040 0.1943980958 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
13 Hb_000720_190 0.196957755 - - unknown [Populus trichocarpa x Populus deltoides]
14 Hb_173281_010 0.220058627 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
15 Hb_148209_060 0.2309937079 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
16 Hb_088538_010 0.2310594155 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
17 Hb_017134_010 0.231466015 - - HEV1.2 [Hevea brasiliensis]
18 Hb_000363_150 0.2320960398 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
19 Hb_002450_070 0.23374159 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
20 Hb_000130_030 0.2356742933 - - PREDICTED: small ubiquitin-related modifier 2-A-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_001902_120 Hb_001902_120 Hb_002045_200 Hb_002045_200 Hb_001902_120--Hb_002045_200 Hb_052941_010 Hb_052941_010 Hb_001902_120--Hb_052941_010 Hb_005568_010 Hb_005568_010 Hb_001902_120--Hb_005568_010 Hb_001425_050 Hb_001425_050 Hb_001902_120--Hb_001425_050 Hb_179520_010 Hb_179520_010 Hb_001902_120--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_001902_120--Hb_010174_070 Hb_002326_170 Hb_002326_170 Hb_002045_200--Hb_002326_170 Hb_002045_200--Hb_052941_010 Hb_002045_200--Hb_001425_050 Hb_002045_200--Hb_005568_010 Hb_003913_140 Hb_003913_140 Hb_002045_200--Hb_003913_140 Hb_052941_010--Hb_005568_010 Hb_052941_010--Hb_001425_050 Hb_000042_240 Hb_000042_240 Hb_052941_010--Hb_000042_240 Hb_052941_010--Hb_002326_170 Hb_005568_010--Hb_000042_240 Hb_005568_010--Hb_001425_050 Hb_005568_010--Hb_002326_170 Hb_001425_060 Hb_001425_060 Hb_001425_050--Hb_001425_060 Hb_001425_050--Hb_002326_170 Hb_108528_010 Hb_108528_010 Hb_179520_010--Hb_108528_010 Hb_179520_010--Hb_010174_070 Hb_000720_190 Hb_000720_190 Hb_179520_010--Hb_000720_190 Hb_004064_020 Hb_004064_020 Hb_179520_010--Hb_004064_020 Hb_001842_130 Hb_001842_130 Hb_179520_010--Hb_001842_130 Hb_010174_070--Hb_108528_010 Hb_064885_080 Hb_064885_080 Hb_010174_070--Hb_064885_080 Hb_001114_340 Hb_001114_340 Hb_010174_070--Hb_001114_340 Hb_010174_070--Hb_004064_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.681913 0.44653 0.771378 0.0368109 0

CAGE analysis