Hb_001425_050

Information

Type -
Description -
Location Contig1425: 102937-103692
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001425_050 0.0 - - -
2 Hb_002045_200 0.1162154199 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
3 Hb_001902_120 0.1349153999 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
4 Hb_052941_010 0.1360622119 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
5 Hb_005568_010 0.1389779659 - - -
6 Hb_001425_060 0.1404069938 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002326_170 0.1504075575 - - Protein Z, putative [Ricinus communis]
8 Hb_001425_070 0.1511994439 - - -
9 Hb_004461_020 0.1655276647 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
10 Hb_000103_030 0.1753031715 - - hypothetical protein VITISV_021700 [Vitis vinifera]
11 Hb_001258_140 0.1817869243 - - -
12 Hb_002450_070 0.1962390358 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
13 Hb_091433_030 0.2009083063 - - -
14 Hb_010174_070 0.2026491308 - - -
15 Hb_001741_040 0.2048966758 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
16 Hb_012053_040 0.20496777 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
17 Hb_001143_070 0.2059908446 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
18 Hb_179520_010 0.2081726412 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
19 Hb_001276_060 0.2098989105 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
20 Hb_108528_010 0.2154582667 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_001425_050 Hb_001425_050 Hb_002045_200 Hb_002045_200 Hb_001425_050--Hb_002045_200 Hb_001902_120 Hb_001902_120 Hb_001425_050--Hb_001902_120 Hb_052941_010 Hb_052941_010 Hb_001425_050--Hb_052941_010 Hb_005568_010 Hb_005568_010 Hb_001425_050--Hb_005568_010 Hb_001425_060 Hb_001425_060 Hb_001425_050--Hb_001425_060 Hb_002326_170 Hb_002326_170 Hb_001425_050--Hb_002326_170 Hb_002045_200--Hb_001902_120 Hb_002045_200--Hb_002326_170 Hb_002045_200--Hb_052941_010 Hb_002045_200--Hb_005568_010 Hb_003913_140 Hb_003913_140 Hb_002045_200--Hb_003913_140 Hb_001902_120--Hb_052941_010 Hb_001902_120--Hb_005568_010 Hb_179520_010 Hb_179520_010 Hb_001902_120--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_001902_120--Hb_010174_070 Hb_052941_010--Hb_005568_010 Hb_000042_240 Hb_000042_240 Hb_052941_010--Hb_000042_240 Hb_052941_010--Hb_002326_170 Hb_005568_010--Hb_000042_240 Hb_005568_010--Hb_002326_170 Hb_091433_030 Hb_091433_030 Hb_001425_060--Hb_091433_030 Hb_001425_070 Hb_001425_070 Hb_001425_060--Hb_001425_070 Hb_000103_030 Hb_000103_030 Hb_001425_060--Hb_000103_030 Hb_004461_020 Hb_004461_020 Hb_001425_060--Hb_004461_020 Hb_003060_040 Hb_003060_040 Hb_001425_060--Hb_003060_040 Hb_001276_060 Hb_001276_060 Hb_002326_170--Hb_001276_060 Hb_008864_060 Hb_008864_060 Hb_002326_170--Hb_008864_060 Hb_002326_170--Hb_001425_070 Hb_002326_170--Hb_001902_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0585065 0.0714975 0.0572682 0.182044 0.92307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.43 35.9449 37.7918 1.11433 0.11422

CAGE analysis