Hb_008864_060

Information

Type -
Description -
Location Contig8864: 52232-52759
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11370g
description POPTRDRAFT_767492; hypothetical protein
nr
ID XP_012072602.1
description PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LP27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10044 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61505: 52292-52901
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008864_060 0.0 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
2 Hb_000250_010 0.1054710537 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
3 Hb_001959_260 0.132660224 - - -
4 Hb_011671_400 0.1490787614 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
5 Hb_001276_060 0.1558540639 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
6 Hb_002099_050 0.1560721048 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003211_050 0.1590230459 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
8 Hb_000714_010 0.1652290097 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
9 Hb_001671_060 0.1711353318 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
10 Hb_005616_030 0.172994905 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
11 Hb_002326_170 0.1752432397 - - Protein Z, putative [Ricinus communis]
12 Hb_000617_290 0.1778738194 - - conserved hypothetical protein [Ricinus communis]
13 Hb_027346_020 0.1802350686 - - -
14 Hb_003050_070 0.1856139564 - - conserved hypothetical protein [Ricinus communis]
15 Hb_048937_030 0.1869922317 - - hypothetical protein RCOM_0231790 [Ricinus communis]
16 Hb_005000_160 0.1911245935 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
17 Hb_001157_220 0.1913466772 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000387_060 0.1955598405 - - -
19 Hb_000803_050 0.1966215906 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
20 Hb_159191_010 0.2053124624 - - protease inhibitor protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_008864_060 Hb_008864_060 Hb_000250_010 Hb_000250_010 Hb_008864_060--Hb_000250_010 Hb_001959_260 Hb_001959_260 Hb_008864_060--Hb_001959_260 Hb_011671_400 Hb_011671_400 Hb_008864_060--Hb_011671_400 Hb_001276_060 Hb_001276_060 Hb_008864_060--Hb_001276_060 Hb_002099_050 Hb_002099_050 Hb_008864_060--Hb_002099_050 Hb_003211_050 Hb_003211_050 Hb_008864_060--Hb_003211_050 Hb_000714_010 Hb_000714_010 Hb_000250_010--Hb_000714_010 Hb_001671_060 Hb_001671_060 Hb_000250_010--Hb_001671_060 Hb_000250_010--Hb_011671_400 Hb_000250_010--Hb_001959_260 Hb_003050_070 Hb_003050_070 Hb_000250_010--Hb_003050_070 Hb_001959_260--Hb_003211_050 Hb_005539_210 Hb_005539_210 Hb_001959_260--Hb_005539_210 Hb_001959_260--Hb_001276_060 Hb_000545_170 Hb_000545_170 Hb_001959_260--Hb_000545_170 Hb_011671_400--Hb_001276_060 Hb_078633_010 Hb_078633_010 Hb_011671_400--Hb_078633_010 Hb_002260_090 Hb_002260_090 Hb_011671_400--Hb_002260_090 Hb_003095_070 Hb_003095_070 Hb_011671_400--Hb_003095_070 Hb_003052_040 Hb_003052_040 Hb_011671_400--Hb_003052_040 Hb_005000_160 Hb_005000_160 Hb_011671_400--Hb_005000_160 Hb_001276_060--Hb_003095_070 Hb_001276_060--Hb_003211_050 Hb_001276_060--Hb_005000_160 Hb_000788_080 Hb_000788_080 Hb_001276_060--Hb_000788_080 Hb_009838_040 Hb_009838_040 Hb_001276_060--Hb_009838_040 Hb_002099_050--Hb_011671_400 Hb_002099_050--Hb_000250_010 Hb_001892_120 Hb_001892_120 Hb_002099_050--Hb_001892_120 Hb_002099_050--Hb_002260_090 Hb_002099_050--Hb_003052_040 Hb_003211_050--Hb_003050_070 Hb_003211_050--Hb_011671_400 Hb_072912_020 Hb_072912_020 Hb_003211_050--Hb_072912_020 Hb_003211_050--Hb_000714_010 Hb_003211_050--Hb_003095_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.9328 0.198623 0.043045 0.484377 5.55504 3.03843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
272.594 187.526 148.806 12.825 0

CAGE analysis