Hb_001959_260

Information

Type -
Description -
Location Contig1959: 251772-254040
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_260 0.0 - - -
2 Hb_008864_060 0.132660224 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
3 Hb_003211_050 0.1475527902 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
4 Hb_000250_010 0.1490000227 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
5 Hb_005539_210 0.1582940376 - - -
6 Hb_001276_060 0.1606998394 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
7 Hb_000545_170 0.1620460258 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
8 Hb_000300_400 0.173693582 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
9 Hb_006745_060 0.1739650235 - - -
10 Hb_003050_070 0.1769541749 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000387_060 0.1772917137 - - -
12 Hb_000235_010 0.1815633273 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
13 Hb_000720_190 0.1846868659 - - unknown [Populus trichocarpa x Populus deltoides]
14 Hb_009838_040 0.1847448026 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
15 Hb_028285_030 0.185970931 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
16 Hb_011671_400 0.1907346082 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
17 Hb_000714_010 0.1918507519 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
18 Hb_002450_070 0.1921257462 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
19 Hb_005000_160 0.1946944485 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
20 Hb_005616_030 0.1958178191 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]

Gene co-expression network

sample Hb_001959_260 Hb_001959_260 Hb_008864_060 Hb_008864_060 Hb_001959_260--Hb_008864_060 Hb_003211_050 Hb_003211_050 Hb_001959_260--Hb_003211_050 Hb_000250_010 Hb_000250_010 Hb_001959_260--Hb_000250_010 Hb_005539_210 Hb_005539_210 Hb_001959_260--Hb_005539_210 Hb_001276_060 Hb_001276_060 Hb_001959_260--Hb_001276_060 Hb_000545_170 Hb_000545_170 Hb_001959_260--Hb_000545_170 Hb_008864_060--Hb_000250_010 Hb_011671_400 Hb_011671_400 Hb_008864_060--Hb_011671_400 Hb_008864_060--Hb_001276_060 Hb_002099_050 Hb_002099_050 Hb_008864_060--Hb_002099_050 Hb_008864_060--Hb_003211_050 Hb_003211_050--Hb_001276_060 Hb_003050_070 Hb_003050_070 Hb_003211_050--Hb_003050_070 Hb_003211_050--Hb_011671_400 Hb_072912_020 Hb_072912_020 Hb_003211_050--Hb_072912_020 Hb_000714_010 Hb_000714_010 Hb_003211_050--Hb_000714_010 Hb_003095_070 Hb_003095_070 Hb_003211_050--Hb_003095_070 Hb_000250_010--Hb_000714_010 Hb_001671_060 Hb_001671_060 Hb_000250_010--Hb_001671_060 Hb_000250_010--Hb_011671_400 Hb_000250_010--Hb_003050_070 Hb_000300_400 Hb_000300_400 Hb_005539_210--Hb_000300_400 Hb_012395_210 Hb_012395_210 Hb_005539_210--Hb_012395_210 Hb_001012_040 Hb_001012_040 Hb_005539_210--Hb_001012_040 Hb_002492_020 Hb_002492_020 Hb_005539_210--Hb_002492_020 Hb_010594_030 Hb_010594_030 Hb_005539_210--Hb_010594_030 Hb_001723_080 Hb_001723_080 Hb_005539_210--Hb_001723_080 Hb_001276_060--Hb_003095_070 Hb_001276_060--Hb_011671_400 Hb_005000_160 Hb_005000_160 Hb_001276_060--Hb_005000_160 Hb_000788_080 Hb_000788_080 Hb_001276_060--Hb_000788_080 Hb_009838_040 Hb_009838_040 Hb_001276_060--Hb_009838_040 Hb_002450_070 Hb_002450_070 Hb_000545_170--Hb_002450_070 Hb_088538_010 Hb_088538_010 Hb_000545_170--Hb_088538_010 Hb_000563_560 Hb_000563_560 Hb_000545_170--Hb_000563_560 Hb_003913_140 Hb_003913_140 Hb_000545_170--Hb_003913_140 Hb_104010_010 Hb_104010_010 Hb_000545_170--Hb_104010_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0979394 0 0 0 0.0389428 0.0344166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.806731 0.493206 0.373869 0.0862964 0

CAGE analysis