Hb_088538_010

Information

Type -
Description -
Location Contig88538: 13446-14600
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07700g
description hypothetical protein
nr
ID KDP32885.1
description hypothetical protein JCGZ_12177 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12177 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088538_010 0.0 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
2 Hb_148209_060 0.1545823785 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
3 Hb_000545_170 0.1693333818 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
4 Hb_002450_070 0.1738570632 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
5 Hb_004218_210 0.1860234469 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
6 Hb_000453_300 0.1877521171 - - latex cystatin [Hevea brasiliensis]
7 Hb_002045_200 0.1946130442 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
8 Hb_002326_170 0.2003584888 - - Protein Z, putative [Ricinus communis]
9 Hb_000749_240 0.2031208601 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001158_190 0.2077020135 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
11 Hb_000363_150 0.2084951591 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
12 Hb_028285_030 0.2115825121 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
13 Hb_000788_080 0.2149875101 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
14 Hb_003913_140 0.2193525572 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
15 Hb_003286_020 0.2203523175 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
16 Hb_001959_260 0.2220163095 - - -
17 Hb_003144_050 0.2243523841 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
18 Hb_002918_040 0.2245800065 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
19 Hb_000720_190 0.2252557595 - - unknown [Populus trichocarpa x Populus deltoides]
20 Hb_000613_160 0.226522109 - - coated vesicle membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_088538_010 Hb_088538_010 Hb_148209_060 Hb_148209_060 Hb_088538_010--Hb_148209_060 Hb_000545_170 Hb_000545_170 Hb_088538_010--Hb_000545_170 Hb_002450_070 Hb_002450_070 Hb_088538_010--Hb_002450_070 Hb_004218_210 Hb_004218_210 Hb_088538_010--Hb_004218_210 Hb_000453_300 Hb_000453_300 Hb_088538_010--Hb_000453_300 Hb_002045_200 Hb_002045_200 Hb_088538_010--Hb_002045_200 Hb_003144_050 Hb_003144_050 Hb_148209_060--Hb_003144_050 Hb_148209_060--Hb_000545_170 Hb_003913_140 Hb_003913_140 Hb_148209_060--Hb_003913_140 Hb_001902_120 Hb_001902_120 Hb_148209_060--Hb_001902_120 Hb_148209_060--Hb_002045_200 Hb_000545_170--Hb_002450_070 Hb_001959_260 Hb_001959_260 Hb_000545_170--Hb_001959_260 Hb_000563_560 Hb_000563_560 Hb_000545_170--Hb_000563_560 Hb_000545_170--Hb_003913_140 Hb_104010_010 Hb_104010_010 Hb_000545_170--Hb_104010_010 Hb_000788_080 Hb_000788_080 Hb_002450_070--Hb_000788_080 Hb_001276_060 Hb_001276_060 Hb_002450_070--Hb_001276_060 Hb_001258_140 Hb_001258_140 Hb_002450_070--Hb_001258_140 Hb_001741_040 Hb_001741_040 Hb_002450_070--Hb_001741_040 Hb_000261_450 Hb_000261_450 Hb_002450_070--Hb_000261_450 Hb_000613_160 Hb_000613_160 Hb_004218_210--Hb_000613_160 Hb_004218_210--Hb_000453_300 Hb_000575_020 Hb_000575_020 Hb_004218_210--Hb_000575_020 Hb_001507_070 Hb_001507_070 Hb_004218_210--Hb_001507_070 Hb_011004_010 Hb_011004_010 Hb_004218_210--Hb_011004_010 Hb_012799_020 Hb_012799_020 Hb_000453_300--Hb_012799_020 Hb_000453_300--Hb_001507_070 Hb_000281_230 Hb_000281_230 Hb_000453_300--Hb_000281_230 Hb_000453_300--Hb_104010_010 Hb_004209_030 Hb_004209_030 Hb_000453_300--Hb_004209_030 Hb_003050_070 Hb_003050_070 Hb_000453_300--Hb_003050_070 Hb_002045_200--Hb_001902_120 Hb_002326_170 Hb_002326_170 Hb_002045_200--Hb_002326_170 Hb_052941_010 Hb_052941_010 Hb_002045_200--Hb_052941_010 Hb_001425_050 Hb_001425_050 Hb_002045_200--Hb_001425_050 Hb_005568_010 Hb_005568_010 Hb_002045_200--Hb_005568_010 Hb_002045_200--Hb_003913_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.939432 0.23173 0.0493655 0.180955 0.244661 0.265091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.4425 12.8393 15.145 1.28187 2.81817

CAGE analysis